Protein Alignment Ssrp and RTT106

DIOPT Version :10

• Sequence 1: NP_523830.2
• Gene: Ssrp / 37767
• FlyBaseID: FBgn0010278
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: NP_014193.1
• Gene: RTT106 / 855515
• SGDID: S000005150
• Length: 455
• Species: Saccharomyces cerevisiae
• Alignment Length: 497
• Identity: 113/497 - (22%)
• Similarity: 194/497 - (39%)
• Gaps: 156/497 - (31%)

  Fly   178 VDKFHQNVMSK-ASVISASGESIAIFREIQILT-------PRGRY---------------DIKIF 219
            :|:..:::..| .:|:.....|:.||.|:....       ..||:               :|...
Yeast     6 LDELPESLSRKIGTVVRVLPSSLEIFEELYKYALNENSNDRSGRHKKPRIDVSSDLLKTDEISET 70

  Fly   220 STFFQLHGKTFDYKIPMDSVLR-----LFMLPHKDSRQMFFVL----------SLDPPIKQG--- 266
            :|.|:|.|      :.:.|.||     :|.|.:.|...:..:|          .|:..||..
Yeast    71 NTIFKLEG------VSVLSPLRKKLDLVFYLSNVDGSPVITLLKGNDRELSIYQLNKNIKMASFL 129

  Fly   267 ----QTRYHYLVLLFAPDEETTIELP-------------FSEAELRDKYEGKLEKEISGPVYEVM 314
                :....||.:.:...|:.....|             |....|.|......||.:     |.:
Yeast   130 PVPEKPNLIYLFMTYTSCEDNKFSEPVVMTLNKENTLNQFKNLGLLDSNVTDFEKCV-----EYI 189

  Fly   315 GKVMKVLIGRKITGPGNFIG------------------HSGTAAVGCSFKAAAGYLYPLERGFIY 361
            .| ..:|.|.||:.|  |:.                  |.||         ..|.||.|....|:
Yeast   190 RK-QAILTGFKISNP--FVNSTLVDTDAEKINSFHLQCHRGT---------KEGTLYFLPDHIIF 242

  Fly   362 IHKPPLHIRFE--EISSVNFARSGGSTR-SFDFEVTLKNGTVHIFSSIEKEEYAKLFDYITQKKL 423
            ..|.|: :.|:  :|.|:.::   ..|| :|:..:..|:|..:.||.|::.||||:.||:.:|::
Yeast   243 GFKKPI-LLFDASDIESITYS---SITRLTFNASLVTKDGEKYEFSMIDQTEYAKIDDYVKRKQM 303

  Fly   424 HVSNMGKDKSGYKDVDFGDSDNENEPDAYLARLKAEAREKEEDDDDGDSDEES-TDEDFKPNENE 487
                  ||||..::                  |||:::.|.: ..||.:|:.| ..|..:..::|
Yeast   304 ------KDKSMSEE------------------LKAKSKSKGQ-ATDGTADQPSILQEATRQMQDE 343

  Fly   488 ------SDVAEEYDSNVESDSDDDSDASGGGGDSDGAKKKKEKKSEKKEKKEKKHKEKERTKKPS 546
                  ||..||.|.|.|::| |.||.| |...||||     :..|:.|:.:::..|:|..|..|
Yeast   344 KKAGVFSDDDEENDQNFEAES-DLSDGS-GQESSDGA-----EDGEEAEEDDEEDDEEEDKKGQS 401

  Fly   547 KKKKD------SGKPKRATTAFMLWLNDTRESIKRENPGIKV 582
            ...:|      :|:|::.     |...:.:|.::.|:..|::
Yeast   402 ALNRDNSFASINGQPEQE-----LQYKEFKEPLELEDIPIEI 438

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ssrp	NP_523830.2	POB3	20..499	CDD:227494	89/406 (22%)
		HMG-box_SSRP1-like	557..621	CDD:438810	4/26 (15%)
RTT106	NP_014193.1	Rtt106_N	5..44	CDD:436350	7/37 (19%)
		PH1-like_Rtt106	67..205	CDD:241457	31/151 (21%)
		PH2-like_Rtt106	216..300	CDD:241458	27/96 (28%)