DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ssrp and POB3

DIOPT Version :10

Sequence 1:NP_523830.2 Gene:Ssrp / 37767 FlyBaseID:FBgn0010278 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_013642.1 Gene:POB3 / 854933 SGDID:S000004534 Length:552 Species:Saccharomyces cerevisiae


Alignment Length:559 Identity:171/559 - (30%)
Similarity:280/559 - (50%) Gaps:80/559 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SGRLKMTEQNIIFKNTKTG--------KVEQISAEDIDLINSQKFVGTWGLRVFTKGGVLHRFTG 76
            |||.::.:..:.:|.:.:|        |...:.|.::..:...:....:.|::.||...:.:..|
Yeast    16 SGRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGCRGYDLKINTKNQGVIQLDG 80

  Fly    77 FRDSEHEKLGKFIKAAYSQEMVEKEMCVKGWNWGTARFMGSVLSFDKESKTIFEVPLSHVSQC-V 140
            |...::..:.......::.::.::|..::|||||......:.:.|....|..||:|.:.::.. :
Yeast    81 FSQDDYNLIKNDFHRRFNIQVEQREHSLRGWNWGKTDLARNEMVFALNGKPTFEIPYARINNTNL 145

  Fly   141 TGKNEVTLEFHQNDD--APVG--LLEMRFHIPAV-------------ESA--------------- 173
            |.||||.:||:..|:  .|.|  |:||||:||.|             ||:               
Yeast   146 TSKNEVGIEFNIQDEEYQPAGDELVEMRFYIPGVIQTNVDENMTKKEESSNEVVPKKEDGAEGED 210

  Fly   174 ------EEDPVDKFHQNVMSKASVISASGESIAIFREIQILTPRGRYDIKIFSTFFQLHGKTFDY 232
                  |:...:.|::.:..||.:...:|::|..|:::...||||||||.|:....:|.|||::|
Yeast   211 VQMAVEEKSMAEAFYEELKEKADIGEVAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEY 275

  Fly   233 KIPMDSVLRLFMLPHKDSRQMFFVLSLDPPIKQGQTRYHYLVLLFAPDEETTIELPFSEAELRDK 297
            |:....:.|:..||..|......||:::||::||||.|.:|||.|..||||.::|...:.:..:.
Yeast   276 KLQHRQIQRIVSLPKADDIHHLLVLAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYEEN 340

  Fly   298 YEGKLEKEISGPVYEVMGKVMKVLIGRKITGPGNFIGHSGTAAVGCSFKAAAGYLYPLERGFIYI 362
            |:.||:|:.....:.|:..|:|.|..|::..||.:.......||.|||||..||||||:..|.::
Yeast   341 YKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSKYDQCAVSCSFKANEGYLYPLDNAFFFL 405

  Fly   363 HKPPLHIRFEEISSVNFARSG---GSTRSFDFEVTLK-NGTVHIFSSIEKEEYAKLFDYITQKKL 423
            .||.|:|.|.::|.||.:|:|   .|:|:||.||.|: |.....|::|.|||...|..::..|.|
Yeast   406 TKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQQLLEQFLKSKNL 470

  Fly   424 HVSNMGKDKSGYKDVDFG-DSDNENEPDAYLARLKAEAREKEEDDDDGDS--DEESTDEDFK-PN 484
            .|.|..::.........| |||                   |||.:.|.:  |:||.||||: .:
Yeast   471 RVKNEDREVQERLQTALGSDSD-------------------EEDINMGSAGEDDESVDEDFQVSS 516

  Fly   485 ENESD-VAEEYDSNVESDSDDDSDASGGGGDSDGAKKKK 522
            :|::| ||||:||:...     |||.||..:...:||.|
Yeast   517 DNDADEVAEEFDSDAAL-----SDAEGGSDEERPSKKPK 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SsrpNP_523830.2 POB3 20..499 CDD:227494 163/534 (31%)
HMG-box_SSRP1-like 557..621 CDD:438810
POB3NP_013642.1 POB3 1..546 CDD:227494 168/553 (30%)
Blue background indicates that the domain is not in the aligned region.

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