DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ssrp and HMGB3

DIOPT Version :10

Sequence 1:NP_523830.2 Gene:Ssrp / 37767 FlyBaseID:FBgn0010278 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001031075.1 Gene:HMGB3 / 838659 AraportID:AT1G20696 Length:147 Species:Arabidopsis thaliana


Alignment Length:111 Identity:42/111 - (37%)
Similarity:55/111 - (49%) Gaps:17/111 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   517 GAKKKKEKKSEKKEKKEKKHKEKERTKKPSK----KKKDSGKPKRATTAFMLWLNDTRESIKREN 577
            |||.|.|.:|.|...          ||||:|    ..||..||||.::||.:::.|.|.:.|.|:
plant     3 GAKSKAETRSTKLSV----------TKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 57

  Fly   578 PGIK-VTEIAKKGGEMWKELKDKSKWEDAAAKDKQR--YHDEMRNY 620
            |..| |..:.|.|||.||.|.|..|....|..||::  |...|:.|
plant    58 PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAY 103

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SsrpNP_523830.2 POB3 20..499 CDD:227494
HMG-box_SSRP1-like 557..621 CDD:438810 25/67 (37%)
HMGB3NP_001031075.1 HMG-box_AtHMGB1-like 36..96 CDD:438821 23/59 (39%)
Blue background indicates that the domain is not in the aligned region.

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