DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment Ssrp and HMGB2

DIOPT Version :9

Sequence 1:	NP_523830.2	Gene:	Ssrp / 37767	FlyBaseID:	FBgn0010278	Length:	723	Species:	Drosophila melanogaster
Sequence 2:	NP_564123.1	Gene:	HMGB2 / 838658	AraportID:	AT1G20693	Length:	144	Species:	Arabidopsis thaliana

Alignment Length:	214	Identity:	55/214 - (25%)
Similarity:	80/214 - (37%)	Gaps:	82/214 - (38%)

- Green bases have known domain annotations that are detailed below.

  Fly   517 GAKKKKEKKSEKKEKKEKKHKEKERTKKPSK-------KKKDSGKPKRATTAFMLWLNDTRESIK 574
            |||.|.|.:|.|...          ||||:|       ..||..||||..:||.:::.|.||:.|
plant     3 GAKSKTETRSSKLSV----------TKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFK 57

  Fly   575 RENPGIK-VTEIAKKGGEMWKELKD--KSKWEDAAAKDKQRYHDEMRNYKPEAGGDSDNEKGGKS 636
            :|||..| |..:.|..|:.||.|.|  |:.:...|.|.|..|...::.|
plant    58 KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAY---------------- 106

  Fly   637 SKKRKTEPSPSKKANTSGSGFKSKEYISDDDSTSSDDEKDNEPAKKKSKPPSDGDAKKKKAKSES 701
              .:|.|..|.:                       |:|.|                     ||.|
plant   107 --NKKLEEGPKE-----------------------DEESD---------------------KSVS 125

  Fly   702 EPEESEEDSNASDEDEEDE 720
            |..:.::..:.|:|:|:|:
plant   126 EVNDEDDAEDGSEEEEDDD 144

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Ssrp	NP_523830.2	POB3	20..499	CDD:227494
		SSrecog	75..284	CDD:281523
		PH2_SSRP1-like	332..427	CDD:270051
		HMG_box	557..620	CDD:278906	23/65 (35%)
HMGB2	NP_564123.1	HMG_box	38..106	CDD:395407	25/67 (37%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	57	1.000	Domainoid score	I3986
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.910