DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ssrp and HMG

DIOPT Version :9

Sequence 1:NP_523830.2 Gene:Ssrp / 37767 FlyBaseID:FBgn0010278 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_189515.1 Gene:HMG / 822505 AraportID:AT3G28730 Length:646 Species:Arabidopsis thaliana


Alignment Length:663 Identity:243/663 - (36%)
Similarity:353/663 - (53%) Gaps:51/663 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTDSLEYNDINAEVRGVLCSGRLKMTEQNIIFKNTKTGKVEQISAEDIDLINSQKFVGTWGLRVF 65
            |.|...:|:|:...||....|.||:....|.:|....||..::...||..::..|...:..|.|.
plant     1 MADGHSFNNISLSGRGGKNPGLLKINSGGIQWKKQGGGKAVEVDRSDIVSVSWTKVTKSNQLGVK 65

  Fly    66 TKGGVLHRFTGFRDSEHEKLGKFIKAAYSQEMVEKEMCVKGWNWGTARFMGSVLSFDKESKTIFE 130
            ||.|:.::|.||||.:...|..|.:::|.:...||::.|.|.|||.....|:.|:|...||..||
plant    66 TKDGLYYKFVGFRDQDVPSLSSFFQSSYGKTPDEKQLSVSGRNWGEVDLHGNTLTFLVGSKQAFE 130

  Fly   131 VPLSHVSQC-VTGKNEVTLEFHQNDDAPV----GLLEMRFHIP-----AVESAEEDPVDKFHQNV 185
            |.|:.|||. :.|||:||||||.:|.|..    .|:|:.||||     .|......|...|:..:
plant   131 VSLADVSQTQLQGKNDVTLEFHVDDTAGANEKDSLMEISFHIPNSNTQFVGDENRPPSQVFNDTI 195

  Fly   186 MSKASVISASGESIAIFREIQILTPRGRYDIKIFSTFFQLHGKTFDYKIPMDSVLRLFMLPHKDS 250
            ::.|.|.....:::..|..|.||||||||::::..:|.:|.|:..|:||...||:|||:||..:.
plant   196 VAMADVSPGVEDAVVTFESIAILTPRGRYNVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQ 260

  Fly   251 RQMFFVLSLDPPIKQGQTRYHYLVLLFAPDEETTIELPFSEAELRDKYEGKLEKEISGPVYEVMG 315
            ...|.|:||||||::|||.|.::|:.|..|.....||..|:..:..|::.|||:...|.::||..
plant   261 PHTFVVISLDPPIRKGQTMYPHIVMQFETDTVVESELSISDELMNTKFKDKLERSYKGLIHEVFT 325

  Fly   316 KVMKVLIGRKITGPGNFIGHSGTAAVGCSFKAAAGYLYPLERGFIYIHKPPLHIRFEEISSVNFA 380
            .|::.|.|.|||.||.|.......||..|.||..|.|||||:||.::.|||..|..:||..|.|.
plant   326 TVLRWLSGAKITKPGKFRSSQDGFAVKSSLKAEDGVLYPLEKGFFFLPKPPTLILHDEIDYVEFE 390

  Fly   381 R---SGGSTRSFDFEVTLKNGTVHIFSSIEKEEYAKLFDYITQKKLHVSNMGKDKSGYKD---VD 439
            |   .|.:...||..:.||....|:|.:|::.||..|:.:|:.|.|.:.|:|  .:|..|   ..
plant   391 RHAAGGANMHYFDLLIRLKTDHEHLFRNIQRNEYHNLYTFISSKGLKIMNLG--GAGTADGVAAV 453

  Fly   440 FGDSDNENEPDAYLARLKAEAREKEEDDDDGDSDEESTDEDFKPNENESDVAEEYDSNVESDSDD 504
            .||:|:::..|.:|.|::.:|.:        :||||  ||||...|:     ::..|..:....|
plant   454 LGDNDDDDAVDPHLTRIRNQAAD--------ESDEE--DEDFVMGED-----DDGGSPTDDSGGD 503

  Fly   505 DSDASGGG-GDSDGAKKKKEKKSEKKEKKEKKHKEK--------ERTKKPSKKKKDSGKPKRATT 560
            |||||.|| |:......|||.|.|....|....|.|        .:.||| |||||...||||.:
plant   504 DSDASEGGVGEIKEKSIKKEPKKEASSSKGLPPKRKTVAADEGSSKRKKP-KKKKDPNAPKRAMS 567

  Fly   561 AFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKELK--DKSKWEDAAAKDKQRYHDEMRNYK-- 621
            .||.:....|::||:|:|||...|:.|..|:.|:::.  ||..:|..|..|||||.||:.:||  
plant   568 GFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNP 632

  Fly   622 ----PEAGGDSDN 630
                .::|.|||:
plant   633 QPMNVDSGNDSDS 645

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SsrpNP_523830.2 POB3 20..499 CDD:227494 178/494 (36%)
SSrecog 75..284 CDD:281523 86/218 (39%)
PH2_SSRP1-like 332..427 CDD:270051 37/97 (38%)
HMG_box 557..620 CDD:278906 26/64 (41%)
HMGNP_189515.1 POB3 7..440 CDD:227494 161/432 (37%)
HMGB-UBF_HMG-box 564..627 CDD:238686 26/62 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 123 1.000 Domainoid score I1825
eggNOG 1 0.900 - - E1_COG5165
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H110735
Inparanoid 1 1.050 380 1.000 Inparanoid score I537
OMA 1 1.010 - - QHG54838
OrthoDB 1 1.010 - - D915055at2759
OrthoFinder 1 1.000 - - FOG0003358
OrthoInspector 1 1.000 - - oto4050
orthoMCL 1 0.900 - - OOG6_101807
Panther 1 1.100 - - LDO PTHR45849
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2245
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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