DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ssrp and Hmgb4l5

DIOPT Version :10

Sequence 1:NP_523830.2 Gene:Ssrp / 37767 FlyBaseID:FBgn0010278 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_008771758.1 Gene:Hmgb4l5 / 691030 RGDID:1588662 Length:168 Species:Rattus norvegicus


Alignment Length:107 Identity:30/107 - (28%)
Similarity:58/107 - (54%) Gaps:6/107 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   520 KKKEKKSEKKEKKEKKHKEKERTK----KPSKKKKDSGKPKRATTAFMLWLNDTRESIKRENPGI 580
            ||::||.|...|::|...::|...    :..::::|:..|::..::|:|:..|..:.||.::|..
  Rat    54 KKEKKKYEALAKRDKDRYQREMRNYSGPRRERRRRDADAPRKPPSSFLLFSQDHFDEIKEQHPNW 118

  Fly   581 KVTEIAKKGGEMWKELK--DKSKWEDAAAKDKQRYHDEMRNY 620
            .|.::||..|.||....  ||..:|:.||..:.:|.:|...|
  Rat   119 TVGQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAY 160

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SsrpNP_523830.2 POB3 20..499 CDD:227494
HMG-box_SSRP1-like 557..621 CDD:438810 20/66 (30%)
Hmgb4l5XP_008771758.1 HMG-box_SF 8..76 CDD:469606 8/21 (38%)
HMG-box_HMGB_rpt2 95..160 CDD:438795 19/64 (30%)
Blue background indicates that the domain is not in the aligned region.

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