Protein Alignment Ssrp and hmgb2a

DIOPT Version :10

• Sequence 1: NP_523830.2
• Gene: Ssrp / 37767
• FlyBaseID: FBgn0010278
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: NP_001032501.2
• Gene: hmgb2a / 641484
• ZFINID: ZDB-GENE-051120-126
• Length: 213
• Species: Danio rerio
• Alignment Length: 256
• Identity: 79/256 - (30%)
• Similarity: 111/256 - (43%)
• Gaps: 66/256 - (25%)

  Fly   482 KPNENESDVA-------EEYDSNVESDSDDDSDASGGGGDSDGAKKKKEK-KSEKKEKKEKKHKE 538
            ||....|..|       ||:.......|.:.|:.|....:.......||| |.|:..|.:|...:
Zfish     7 KPRGKTSSYAFFVQTCREEHKKKNPGTSVNFSEFSKKCSERWRTMSSKEKGKFEEMAKTDKVRYD 71

  Fly   539 KE-------RTKKPSKKKKDSGKPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL 596
            :|       :..|..|||||...|||..:||.::.:|.|..:|.:||||.:.:||||.||||.:|
Zfish    72 REMKNYVPPKGAKGGKKKKDPNAPKRPPSAFFVFCSDHRPKVKGDNPGISIGDIAKKLGEMWSKL 136

  Fly   597 --KDKSKWEDAAAKDKQRYHDEMRNYKPEAGGDSDNEKGGKSSKKRKTEPSPSKKANTSGSGFKS 659
              |:||.:|..|.|.|::|..::..|:         .||||        |..:||   .|.|
Zfish   137 SPKEKSPYEQKAMKLKEKYEKDVAAYR---------AKGGK--------PDGAKK---GGPG--- 178

  Fly   660 KEYISDDDSTSSDDEKDNEPAKKKSKPPSDGDAKKKKAKSESEPEESEEDSNASDEDEEDE 720
                              .||.||::...|.|        |.|.||.||:.:..|||::||
Zfish   179 ------------------RPAGKKAEADDDDD--------EDEDEEDEEEEDEEDEDDDDE 213

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ssrp	NP_523830.2	POB3	20..499	CDD:227494	6/23 (26%)
		HMG-box_SSRP1-like	557..621	CDD:438810	27/65 (42%)
hmgb2a	NP_001032501.2	HMG-box_HMGB_rpt1	7..75	CDD:438794	17/67 (25%)
		HMG-box_HMGB_rpt2	93..163	CDD:438795	29/69 (42%)