DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ssrp and hmg20b

DIOPT Version :10

Sequence 1:NP_523830.2 Gene:Ssrp / 37767 FlyBaseID:FBgn0010278 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001018387.1 Gene:hmg20b / 553572 ZFINID:ZDB-GENE-030131-4258 Length:301 Species:Danio rerio


Alignment Length:207 Identity:55/207 - (26%)
Similarity:93/207 - (44%) Gaps:12/207 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   514 DSDGAKKKKEKKSEKKEKKEKKHKEKERTKKPSKKKKD--SGKPKRATTAFMLWLNDTRESIKRE 576
            |:..:|..::..|.::|.:......|:|.....||:|.  ...||...|.::.:||:.||.|:..
Zfish    10 DAPASKDSQQTDSPQEENQSTSQPVKKRGWPKGKKRKKVLPNGPKAPVTGYVRFLNERREHIRAL 74

  Fly   577 NPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPEAGGDSDNEKGGKSSKK 639
            :|.:...||.|:.|..|..|  .||.::.|.|.:||.:|..|:|.|:..........|......|
Zfish    75 HPDLPFPEITKRLGAEWSRLAPHDKQRYLDEAERDKMQYARELREYQKSEAYQITCAKVQDKRIK 139

  Fly   640 RKTEPSPSKKANTSG-SGFKSKEYISDDDSTSSDDE-KDNEPAKKKSKPPSDGDAKKKKAKSESE 702
            |:...|....||:|| ||||:.::.:..|.....:| .|...|::...      .:.:||..|.|
Zfish   140 REELTSVIINANSSGSSGFKNSDFTARFDVPIFTEEFLDQNKAREAEL------RRLRKANVEFE 198

  Fly   703 PEESEEDSNASD 714
            .:.:....:.:|
Zfish   199 EQNAVLQKHIAD 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SsrpNP_523830.2 POB3 20..499 CDD:227494
HMG-box_SSRP1-like 557..621 CDD:438810 22/65 (34%)
hmg20bNP_001018387.1 HMG-box_HMG20B 52..136 CDD:438834 26/83 (31%)
Blue background indicates that the domain is not in the aligned region.

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