DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ssrp and ssrp1

DIOPT Version :9

Sequence 1:NP_523830.2 Gene:Ssrp / 37767 FlyBaseID:FBgn0010278 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001184126.1 Gene:ssrp1 / 447983 XenbaseID:XB-GENE-994294 Length:695 Species:Xenopus tropicalis


Alignment Length:713 Identity:369/713 - (51%)
Similarity:490/713 - (68%) Gaps:42/713 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTDSLEYNDINAEVRGVLCSGRLKMTEQNIIFKNTKTGKVEQISAEDIDLINSQKFVGTWGLRVF 65
            |.|:||:|||..||:|.:..|||:::...:::||.||||||.|||.||..:..::.....|:::.
 Frog     1 MADTLEFNDIYQEVKGSMNDGRLRLSRAGLMYKNNKTGKVENISAADIAEVVWRRVALGHGIKLL 65

  Fly    66 TKGGVLHRFTGFRDSEHEKLGKFIKAAYSQEMVEKEMCVKGWNWGTARFMGSVLSFDKESKTIFE 130
            |.||.::::.||||:|::||..:.|:.:..|:|||::||||||||:.||.|.:||||...:..||
 Frog    66 TNGGHVYKYDGFRDTEYDKLFDYFKSHFRVELVEKDLCVKGWNWGSVRFGGQLLSFDIGDQPAFE 130

  Fly   131 VPLSHVSQCVTGKNEVTLEFHQNDDAPVGLLEMRFHIPAVESAEEDPVDKFHQNVMSKASVISAS 195
            :|||:||||.|||||||||||||||:.|.|:|:||::|..:....|||:.|.|||:|||.||.|:
 Frog   131 LPLSNVSQCTTGKNEVTLEFHQNDDSEVSLMEIRFYVPPTQDDGGDPVEAFAQNVLSKADVIQAT 195

  Fly   196 GESIAIFREIQILTPRGRYDIKIFSTFFQLHGKTFDYKIPMDSVLRLFMLPHKDSRQMFFVLSLD 260
            |:::.||||:|.|||||||||:|:.||..|||||||||||..:|||||:|||||.||||||:|||
 Frog   196 GDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLD 260

  Fly   261 PPIKQGQTRYHYLVLLFAPDEETTIELPFSEAELRDKYEGKLEKEISGPVYEVMGKVMKVLIGRK 325
            |||||||||||:|:|||:.||:.|:.|..||.|:..::||||:|.:||.:||::.:|||.|:.||
 Frog   261 PPIKQGQTRYHFLILLFSKDEDMTLTLNMSEEEVERRFEGKLKKNMSGCLYEMVSRVMKALVNRK 325

  Fly   326 ITGPGNFIGHSGTAAVGCSFKAAAGYLYPLERGFIYIHKPPLHIRFEEISSVNFARSGGSTRSFD 390
            ||.||||.||||:..:.||:||::|.||||||||||:||||:||||:|::.|||||...:|||||
 Frog   326 ITVPGNFQGHSGSQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEVNCVNFARGTTTTRSFD 390

  Fly   391 FEVTLKNGTVHIFSSIEKEEYAKLFDYITQKKLHVSNMGKDKSGYKDV--DFGDSDNENEPDAYL 453
            ||:..|.|:.:.|||||:|||.||||::..|||.:.|.|. |.|.|..  |:.||| |::.||||
 Frog   391 FEIETKQGSQYTFSSIEREEYGKLFDFVNAKKLSIKNRGL-KEGMKPAYDDYADSD-EDQHDAYL 453

  Fly   454 ARLKAEAREKEEDDDDGDSDEESTDEDFKPNENESDVAEEYDSNVE-SDSDDDSDASGGGGDSDG 517
            .|:|.|.:.:|..|.|...||  |||.|.|.|.|.:||||:|||.. |.|..|||        |.
 Frog   454 ERMKEEGKIRENADSDESGDE--TDESFNPGEEEDEVAEEFDSNPSASSSSADSD--------DD 508

  Fly   518 AKKKKEKKSEK--KEKKEKKHKEKERTKKPSKKKKDSGKPKRATTAFMLWLNDTRESIKRENPGI 580
            |:||||.|..|  ||||.:|       ||.|||.||...|||..:|:|||||.:||.||.|||||
 Frog   509 AEKKKEAKRAKIVKEKKPRK-------KKESKKTKDPSAPKRPMSAYMLWLNASREKIKSENPGI 566

  Fly   581 KVTEIAKKGGEMWKEL-KD-KSKWEDAAAKDKQRYHDEMRNYKPEAGGD-SDNEKGGKSSKKRKT 642
            .:|:::||.||:||.: || |.:|:..|.:.|:.|...|:.|......: |..||..|..||:|.
 Frog   567 SITDLSKKAGEIWKSMSKDKKEEWDRRAEEAKRDYEKAMKEYNSSTPTEASKKEKKAKGEKKKKA 631

  Fly   643 EPSPSK-------------KANTSGSGFKSKEYISDDDSTSSDDEKDNEPAKKKSKPPSDGDA 692
            |.|..|             |:||  ..|||||::|.|:|:|.|..:..:..:..|.|.|..::
 Frog   632 ESSEKKKHVKASSPARAALKSNT--DSFKSKEFVSSDESSSDDSIQKKDSEEIASTPDSSAES 692

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SsrpNP_523830.2 POB3 20..499 CDD:227494 274/480 (57%)
SSrecog 75..284 CDD:281523 135/208 (65%)
PH2_SSRP1-like 332..427 CDD:270051 58/94 (62%)
HMG_box 557..620 CDD:278906 31/64 (48%)
ssrp1NP_001184126.1 POB3 21..471 CDD:227494 258/451 (57%)
HMG_box 541..608 CDD:366139 33/66 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 233 1.000 Domainoid score I2338
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H110735
Inparanoid 1 1.050 711 1.000 Inparanoid score I635
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D244836at33208
OrthoFinder 1 1.000 - - FOG0003358
OrthoInspector 1 1.000 - - oto105059
Panther 1 1.100 - - LDO PTHR45849
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2245
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
99.160

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