DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ssrp and tHMG1

DIOPT Version :9

Sequence 1:NP_523830.2 Gene:Ssrp / 37767 FlyBaseID:FBgn0010278 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster


Alignment Length:86 Identity:32/86 - (37%)
Similarity:53/86 - (61%) Gaps:5/86 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   551 DSG-KPKRATTAFMLWLNDT-RESIKRENPGIKVTEIAKKGGEMWKELKDKSK--WEDAAAKDKQ 611
            |.| :||:..:|||||:|.| |:.||.|:|...|.|::.||||||:.:.|:.|  |:::|.....
  Fly     3 DCGARPKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMA 67

  Fly   612 RYHDEMRNYK-PEAGGDSDNE 631
            .|.::::.:. |:....||.:
  Fly    68 EYKEKLKQWNFPKEHRFSDTQ 88

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SsrpNP_523830.2 POB3 20..499 CDD:227494
SSrecog 75..284 CDD:281523
PH2_SSRP1-like 332..427 CDD:270051
HMG_box 557..620 CDD:278906 25/65 (38%)
tHMG1NP_651055.1 HMGB-UBF_HMG-box 8..74 CDD:238686 27/65 (42%)
Herpes_U55 <55..>116 CDD:253772 7/34 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 57 1.000 Domainoid score I3986
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.910

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