DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ssrp and hmgb1

DIOPT Version :10

Sequence 1:NP_523830.2 Gene:Ssrp / 37767 FlyBaseID:FBgn0010278 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_989226.1 Gene:hmgb1 / 394834 XenbaseID:XB-GENE-1001206 Length:211 Species:Xenopus tropicalis


Alignment Length:208 Identity:66/208 - (31%)
Similarity:91/208 - (43%) Gaps:59/208 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   521 KKEKKSEKKEKKEKKHKEKE-RTKKP-----SKKKKDSGKPKRATTAFMLWLNDTRESIKRENPG 579
            |::.|.|...|.:|...|:| :|..|     .||.||...|||..:||.|:.::.|..||.|:||
 Frog    55 KEKSKFEDMAKADKVRYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPG 119

  Fly   580 IKVTEIAKKGGEMWKE--LKDKSKWEDAAAKDKQRYHDEMRNYKPEAGGDSDNEKGGKSSKKRKT 642
            ..:.:||||.||||..  ..||..:|..|||.|::|..::..|                  :.|.
 Frog   120 STIGDIAKKLGEMWNNTATDDKLPYERKAAKLKEKYEKDVAAY------------------RAKG 166

  Fly   643 EPSPSKKANTSGSGFKSKEYISDDDSTSSDDEKDNEPAKKKSKPPSDGDAKKKKAKSESEPEESE 707
            :|.|:|||.......|.||   |||    |||.|:                          :|.|
 Frog   167 KPEPAKKAPAKFEKAKKKE---DDD----DDEDDD--------------------------DEEE 198

  Fly   708 EDSNASDEDEEDE 720
            ||....||:::||
 Frog   199 EDEEEEDEEDDDE 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SsrpNP_523830.2 POB3 20..499 CDD:227494
HMG-box_SSRP1-like 557..621 CDD:438810 26/65 (40%)
hmgb1NP_989226.1 HMG-box_HMGB_rpt1 8..76 CDD:438794 7/20 (35%)
HMG-box_HMGB_rpt2 93..163 CDD:438795 29/87 (33%)
Blue background indicates that the domain is not in the aligned region.

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