DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ssrp and hmgb2

DIOPT Version :10

Sequence 1:NP_523830.2 Gene:Ssrp / 37767 FlyBaseID:FBgn0010278 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_988904.1 Gene:hmgb2 / 394499 XenbaseID:XB-GENE-1000246 Length:212 Species:Xenopus tropicalis


Alignment Length:206 Identity:67/206 - (32%)
Similarity:94/206 - (45%) Gaps:57/206 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   521 KKEKKSEKKEKKEKKHKEKE-------RTKKPSKKKKDSGKPKRATTAFMLWLNDTRESIKRENP 578
            |::.|.|:..|.:|...|:|       :.:|..|||||...|||..:||.|:.::.|..||.|:|
 Frog    55 KEKSKFEEMAKNDKVRYEREMKTYIPPKGEKKGKKKKDPNAPKRPPSAFFLFCSEHRPQIKSESP 119

  Fly   579 GIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPEAGGDSDNEKGGKSSKKRK 641
            |:.:.:.|||.||||.|.  |||..:|..|||.|::|..::..||.:          |||...:|
 Frog   120 GLSIGDTAKKLGEMWSEQTPKDKLPYEQKAAKLKEKYEKDVAAYKAK----------GKSDVGKK 174

  Fly   642 TEPSPSKKANTSGSGFKSKEYISDDDSTSSDDEKDNEPAKKKSKPPSDGDAKKKKAKSESEPEES 706
            ....|      :||                         |||::|..|.|       .|.|.||.
 Frog   175 VPGRP------TGS-------------------------KKKAEPEEDDD-------DEDEDEED 201

  Fly   707 EEDSNASDEDE 717
            |||.:..|:||
 Frog   202 EEDDDDEDDDE 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SsrpNP_523830.2 POB3 20..499 CDD:227494
HMG-box_SSRP1-like 557..621 CDD:438810 27/65 (42%)
hmgb2NP_988904.1 HMG-box_HMGB_rpt1 8..76 CDD:438794 7/20 (35%)
HMG-box_HMGB_rpt2 94..164 CDD:438795 29/69 (42%)
Blue background indicates that the domain is not in the aligned region.

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