DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ssrp and HmgZ

DIOPT Version :10

Sequence 1:NP_523830.2 Gene:Ssrp / 37767 FlyBaseID:FBgn0010278 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster


Alignment Length:125 Identity:55/125 - (44%)
Similarity:80/125 - (64%) Gaps:20/125 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   554 KPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKELKDKSKWEDAAAKDKQRYHDEMR 618
            :|||..:|:|||||:|||.||::|||.|||:|||:|||:|:.||||::||..|.|.|:.|:..::
  Fly     5 RPKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLKDKTEWEQKAIKMKEEYNKAVK 69

  Fly   619 NYKPEAGGDSDNEKGGKSSKKRKTEPSPSKKANTSGSGFKSKEYISDDDSTSSDDEKDNE 678
            .|:...|.||     |...|::|....|:|||       |.||        ||::|:::|
  Fly    70 EYEANGGTDS-----GAPKKRKKAAAKPAKKA-------KKKE--------SSEEEEEDE 109

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SsrpNP_523830.2 POB3 20..499 CDD:227494
HMG-box_SSRP1-like 557..621 CDD:438810 35/63 (56%)
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 35/63 (56%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.