Protein Alignment Ssrp and Hmg20b

DIOPT Version :10

• Sequence 1: NP_523830.2
• Gene: Ssrp / 37767
• FlyBaseID: FBgn0010278
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: XP_063119784.1
• Gene: Hmg20b / 362825
• RGDID: 1309235
• Length: 407
• Species: Rattus norvegicus
• Alignment Length: 256
• Identity: 62/256 - (24%)
• Similarity: 104/256 - (40%)
• Gaps: 58/256 - (22%)

  Fly   451 AYLARLKAEAREKEEDDDDGDSDEESTDEDFKPNENESDVAEEYDSNVESDSDDDSDASGGGGDS 515
            |::..:|.|..|.....:.|..:||:     :|..:..|.|.             |..|...|.|
  Rat    25 AFVVAVKQERSEGPRAGEKGPQEEEA-----RPRPHAPDPAH-------------SSQSPSQGHS 71

  Fly   516 DGAKKKKEKKSEKKEKKEKKHKEKERTKKPSKKKKDSGKPKRATTAFMLWLNDTRESIKRENPGI 580
            ...:..|::...|.:|:              ||...:| ||...|.::.:||:.||.|:..:|.:
  Rat    72 PLLQPVKKRGWPKGKKR--------------KKILPNG-PKAPVTGYVRFLNERREQIRTRHPDL 121

  Fly   581 KVTEIAKKGGEMWKELK--DKSKWEDAAAKDKQRYHDEMRNYKPEAGGDSDNEKGGKSSKKRKTE 643
            ...||.|..|..|.:|:  :|.::.|.|.|:||:|..|:..|:.........||  ....|.|.|
  Rat   122 PFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYKVCTEK--IQENKIKKE 184

  Fly   644 PSPSKKANT---------SGSGFK-------SKEYISDDDSTSSDDE---KDNEPAKKKSK 685
            .|.|...||         .|.||.       ::|::  |.:.:..|:   .|:.||.::::
  Rat   185 DSSSGLMNTLLNGHKGVDCGDGFSTFDVPIFTEEFL--DQNKALQDQFQGSDSCPAAREAE 243

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ssrp	NP_523830.2	POB3	20..499	CDD:227494	10/47 (21%)
		HMG-box_SSRP1-like	557..621	CDD:438810	21/65 (32%)
Hmg20b	XP_063119784.1	None