DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ssrp and hmgb1a

DIOPT Version :10

Sequence 1:NP_523830.2 Gene:Ssrp / 37767 FlyBaseID:FBgn0010278 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_955849.2 Gene:hmgb1a / 321622 ZFINID:ZDB-GENE-030131-341 Length:205 Species:Danio rerio


Alignment Length:208 Identity:57/208 - (27%)
Similarity:89/208 - (42%) Gaps:65/208 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   521 KKEKKSEKKEKKEKKHKEKERTK----KPSKKK--KDSGKPKRATTAFMLWLNDTRESIKRENPG 579
            |::.|.|...|.:|...|:|...    |..|||  ||...|||..:||.::.::.|..:|.|.||
Zfish    54 KEKGKFEDMAKLDKARYEREMKNYIPPKGEKKKRFKDPNAPKRPPSAFFIFCSEFRPKVKEETPG 118

  Fly   580 IKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPEAGGDSDNEKGGKSSKKRKT 642
            :.:.::||:.||||.::  ::|..:|..|||.|::|..::..|:      |..:.||.:      
Zfish   119 LSIGDVAKRLGEMWNKISSEEKQPYEKKAAKLKEKYEKDIAAYR------SKGKVGGGA------ 171

  Fly   643 EPSPSKKANTSGSGFKSKEYISDDDSTSSDDEKDNEPAKKKSKPPSDGDAKKKKAKSESEPEESE 707
                                                 ||..|||        .||..|.|.::.|
Zfish   172 -------------------------------------AKAPSKP--------DKANDEDEDDDEE 191

  Fly   708 EDSNASDEDEEDE 720
            ||.:..||:|||:
Zfish   192 EDEDDDDEEEEDD 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SsrpNP_523830.2 POB3 20..499 CDD:227494
HMG-box_SSRP1-like 557..621 CDD:438810 21/65 (32%)
hmgb1aNP_955849.2 HMG-box_HMGB_rpt1 7..75 CDD:438794 7/20 (35%)
HMG-box_HMGB_rpt2 92..162 CDD:438795 23/69 (33%)
Blue background indicates that the domain is not in the aligned region.

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