Protein Alignment Ssrp and Hmgb4l6

DIOPT Version :10

• Sequence 1: NP_523830.2
• Gene: Ssrp / 37767
• FlyBaseID: FBgn0010278
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: XP_006257666.1
• Gene: Hmgb4l6 / 317597
• RGDID: 1560585
• Length: 168
• Species: Rattus norvegicus
• Alignment Length: 209
• Identity: 45/209 - (21%)
• Similarity: 78/209 - (37%)
• Gaps: 65/209 - (31%)

  Fly   428 MGKDKSGYKDV----------DFGDSDNENEPDAYLARLKAEAREKEEDDDDGDSDEESTDEDFK 482
            ||||......|          ||.:...|.:|:.|.                          ||
  Rat     1 MGKDSKRRPKVNVSPYVHFMMDFRNQTREQQPNTYY--------------------------DF- 38

  Fly   483 PNENESDVAEEYDSNVESDSDDDSDASGGGGDSDGAKKKKEKKSEKKEKKEKKHKEKERTK---- 543
             .|.....:|::.:                     ..||::||.|...|::|...::|...
  Rat    39 -TEFSRKCSEKWKT---------------------ISKKEKKKYEALAKRDKDRYQREMRNYTGP 81

  Fly   544 KPSKKKKDSGKPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKELK--DKSKWEDAA 606
            :..::::|...|::..::|:|:..|..|.||.::|...|.::||..|.||....  ||..:|:.|
  Rat    82 RRERRRRDPDAPRKPPSSFLLFSQDHFEEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERA 146

  Fly   607 AKDKQRYHDEMRNY 620
            |..:.:|.:|...|
  Rat   147 AVLRAKYLEEREAY 160

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ssrp	NP_523830.2	POB3	20..499	CDD:227494	14/80 (18%)
		HMG-box_SSRP1-like	557..621	CDD:438810	21/66 (32%)
Hmgb4l6	XP_006257666.1	HMG-box_SF	8..76	CDD:469606	18/116 (16%)
		HMG-box_HMGB_rpt2	95..161	CDD:438795	21/66 (32%)