Protein Alignment Ssrp and hmg-3

DIOPT Version :10

• Sequence 1: NP_523830.2
• Gene: Ssrp / 37767
• FlyBaseID: FBgn0010278
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: NP_491688.1
• Gene: hmg-3 / 172250
• WormBaseID: WBGene00001973
• Length: 689
• Species: Caenorhabditis elegans
• Alignment Length: 717
• Identity: 304/717 - (42%)
• Similarity: 441/717 - (61%)
• Gaps: 43/717 - (5%)

  Fly     1 MTDSLEYNDINAEVRGVLCSGRLKMTEQNIIFKNTKTGKVEQISAEDIDLINSQKFVGTWGLRVF 65
            ||: |::..:..|..|.|..|.|.:||.:|.|...|.||...|:..|:|.:..||.....||||.
 Worm     1 MTE-LKFKGVYVEDIGHLTCGTLTLTENSINFIGDKGGKSVYITGTDVDKLKWQKLGNKPGLRVG 64

  Fly    66 TKGGVLHRFTGFRDSEHEKLGKFIKAAYSQEMVEKEMCVKGWNWGTARFMGSVLSFDKESKTIFE 130
            ...|..|||.||.|.:.:|:..|..:.:|:.:.:..:.:.|||:|.|...|..:.|..|::.|||
 Worm    65 LSDGGAHRFGGFLDDDLQKIQSFTSSNWSKSINQSNLFINGWNYGQADVKGKNIEFSWENEPIFE 129

  Fly   131 VPLSHVSQCVTGKNEVTLEFHQNDDAPVGLLEMRFHIPA-VESAEE-DPVDKFHQNVMSKASVIS 193
            :|.::||..:..|||..||||||:.:.|.|:|||||:|. :|:.|: |.|::|.:.|::.|.:.:
 Worm   130 IPCTNVSNVIANKNEAILEFHQNEQSKVQLMEMRFHMPVDLENEEDTDKVEEFKKAVLAYAGLEA 194

  Fly   194 ASGESIAIFREIQILTPRGRYDIKIFSTFFQLHGKTFDYKIPMDSVLRLFMLPHKDSRQMFFVLS 258
            .:.:.|.:..:|...|||||||||::.|...|||||:|||||:.::.|||::||||.||::||||
 Worm   195 ETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPVKTINRLFLVPHKDGRQVYFVLS 259

  Fly   259 LDPPIKQGQTRYHYLVLLFAPDEETTIELPFSEAELRDKYEGKLEKEISGPVYEVMGKVMKVLIG 323
            |:|||:||||.|.||:..|..|||..:||..::.:| |.:.|.|::|::||:||.:..:.|.:..
 Worm   260 LNPPIRQGQTHYSYLIFEFGKDEEEDLELSLTDEQL-DYFNGNLQREMTGPIYETISILFKSICN 323

  Fly   324 RKITGPGNFIGHSGTAAVGCSFKAAAGYLYPLERGFIYIHKPPLHIRFEEISSVNFAR--SGGST 386
            .|:|.||.|:|.|||.|:.|:.:...|.|||:|:||::|.||.::||||||||.:|||  ||..|
 Worm   324 LKVTVPGRFLGSSGTPAIQCTHRQNLGLLYPMEKGFLFIQKPVMYIRFEEISSCHFARSDSGTVT 388

  Fly   387 RSFDFEVTLKNGTVHIFSSIEKEEYAKLFDYITQKKLHVSNMGKDKSGYKDVDFGDSDNENEPDA 451
            |:||||:.||.|:...||:::|||..|||||:.:|::.:.|  ..:...|...:|.|| |::.|.
 Worm   389 RTFDFEIDLKTGSSLTFSAMDKEENNKLFDYLNKKEIKIRN--SHRIDNKSAGYGSSD-EDDIDP 450

  Fly   452 YLARLKAEAREKEEDDDDGDSDEE-STDEDFKPNENESDVAEEYDS--NVESDSDDDSDASGGG- 512
            |.:.:|||.||:::|.||..:||: ..|:|.|..:|:.|.:|...|  :.|.||..:.||||.|
 Worm   451 YKSTVKAEGREQDDDSDDESTDEDYDLDKDMKKQKNDKDSSEGSGSEPDDEYDSGSEKDASGTGE 515

  Fly   513 --GDSDGAKKKKEKKSEKKEKKEKKHKE-KERTKKPSKKKKDSGKPKRATTAFMLWLNDTRESIK 574
              .|.:..:.||::..|||.|:|||.|. ||:..|..||.||..:|||||||:::|.|..|.|:|
 Worm   516 SDPDEENIEPKKKESKEKKNKREKKEKPVKEKAVKKGKKTKDPNEPKRATTAYIIWFNANRNSMK 580

  Fly   575 RENPGIKVTEIAKKGGEMWKELK--DKSKWEDAAAKDKQRYHDEMRNYKPEAGGDSDNEKGGKSS 637
            .:  |..:.::|||.|..||.:.  ||.:|.|.||:||.||..||:.||...||   .||....|
 Worm   581 ED--GDTLGDVAKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEMKEYKKNGGG---VEKASGPS 640

  Fly   638 KKRKTEPSPSKKANTSGSGFKSKEYISDDDSTSSDDEKDNEPAKKKSKPPSDGDAKKKKAKSESE 702
            .|:.::.||.|:       |||||:|||     :||..|:||.|.| |..||       |.|||.
 Worm   641 TKKSSDQSPGKQ-------FKSKEHISD-----TDDSDDDEPLKAK-KDESD-------AASESS 685

  Fly   703 PE 704
            .|
 Worm   686 GE 687

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ssrp	NP_523830.2	POB3	20..499	CDD:227494	207/485 (43%)
		HMG-box_SSRP1-like	557..621	CDD:438810	29/65 (45%)
hmg-3	NP_491688.1	POB3	20..497	CDD:227494	206/480 (43%)
		HMG-box_SSRP1-like	563..627	CDD:438810	29/65 (45%)