Protein Alignment Ssrp and LOC108349258

DIOPT Version :10

• Sequence 1: NP_523830.2
• Gene: Ssrp / 37767
• FlyBaseID: FBgn0010278
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: XP_017457896.2
• Gene: LOC108349258 / 108349258
• RGDID: 11417756
• Length: 168
• Species: Rattus norvegicus
• Alignment Length: 209
• Identity: 46/209 - (22%)
• Similarity: 80/209 - (38%)
• Gaps: 65/209 - (31%)

  Fly   428 MGKDK--------SGYKD--VDFGDSDNENEPDAYLARLKAEAREKEEDDDDGDSDEESTDEDFK 482
            ||||.        |.|..  :||.:...|.:|:.|.                          ||
  Rat     1 MGKDSKVRPKVNVSPYVHFMMDFRNQTREQQPNTYY--------------------------DF- 38

  Fly   483 PNENESDVAEEYDSNVESDSDDDSDASGGGGDSDGAKKKKEKKSEKKEKKEKKHKEKERTK---- 543
             .|.....:|::.:                     ..||::||.|...|::|...::|...
  Rat    39 -TEFSRKCSEKWKT---------------------ISKKEKKKYEALAKRDKDRYQREMRNYTGP 81

  Fly   544 KPSKKKKDSGKPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKELK--DKSKWEDAA 606
            :..::::|...|::..::|:|:..|..|.||.::|...|.::||..|.||....  ||..:|:.|
  Rat    82 RRERRRRDPDAPRKPPSSFLLFSQDHFEEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERA 146

  Fly   607 AKDKQRYHDEMRNY 620
            |..:.:|.:|...|
  Rat   147 AVLRAKYLEEREAY 160

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ssrp	NP_523830.2	POB3	20..499	CDD:227494	15/80 (19%)
		HMG-box_SSRP1-like	557..621	CDD:438810	21/66 (32%)
LOC108349258	XP_017457896.2	HMG-box_SF	8..76	CDD:469606	19/116 (16%)
		HMG-box_HMGB_rpt2	95..161	CDD:438795	21/66 (32%)