DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG15800 and SK4

DIOPT Version :9

Sequence 1:NP_611828.1 Gene:CG15800 / 37763 FlyBaseID:FBgn0034904 Length:157 Species:Drosophila melanogaster
Sequence 2:NP_564105.1 Gene:SK4 / 838604 AraportID:AT1G20140 Length:163 Species:Arabidopsis thaliana


Alignment Length:138 Identity:38/138 - (27%)
Similarity:67/138 - (48%) Gaps:15/138 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVRFETRDGRTISVNLALLEKSLVIREMCRVGQVPEDE--DFVLPLHGIHSNVLLKILLWAEYHE 63
            |:..::.||.:..:..|:..||..|:.|.      ||:  |..:||..:...:|.|::   ||.:
plant     7 MIILKSSDGESFEIEEAVAVKSQTIKHMI------EDDCADNGIPLPNVTGAILAKVI---EYCK 62

  Fly    64 KHEEPAWV--DSKDPLPAEEIELQISDWDKEFLRVEIDSICKIMEGCNYLDIPWLYKL-CAQKLV 125
            ||.|.|..  ..||...:.|.: ::.:||.||::|:..::..::...|||:|..|..| |.....
plant    63 KHVEAAAEAGGDKDFYGSAEND-ELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVAD 126

  Fly   126 FLSSREPE 133
            .:..:.||
plant   127 QMRGKTPE 134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15800NP_611828.1 BTB 1..113 CDD:295341 32/115 (28%)
SK4NP_564105.1 BTB_POZ_SKP1 7..128 CDD:349631 36/130 (28%)
Skp1 115..161 CDD:396171 5/20 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5201
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11165
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

Return to query results.
Submit another query.