DRSC/TRiP Functional Genomics Resources

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Protein Alignment sona and Thsd7a

DIOPT Version :10

Sequence 1:NP_001137746.1 Gene:sona / 37762 FlyBaseID:FBgn0034903 Length:1102 Species:Drosophila melanogaster
Sequence 2:NP_001178899.2 Gene:Thsd7a / 500032 RGDID:1566201 Length:1645 Species:Rattus norvegicus


Alignment Length:463 Identity:87/463 - (18%)
Similarity:139/463 - (30%) Gaps:125/463 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   407 LPVYDIAVAITKLDMCRRT--SAYGECNRGTAGFAYVGGACVVNKRLEK---VNS--VAIIE--- 461
            :|....|..|...|.|:.|  |.:..|| |..|........:|.|..:|   .||  ..:||   
  Rat   881 VPALTQACQIPCQDDCQFTSWSKFSSCN-GDCGAVRTRKRAIVGKSKKKEKCKNSHLYPLIETQY 944

  Fly   462 ---------DTGGFSGIIVAAHEVGHLLGAVHDGSPPPSYLGGPG----AQRCRWEDGYIMSDLR 513
                     ..|.:|..|:...:...|||....|.....   |.|    |..|..::|.::...|
  Rat   945 CPCDKYNAQPVGNWSDCILPEGKAEVLLGVKVQGDNKEC---GQGYRYQAMACYDQNGRLVETSR 1006

  Fly   514 HTERGF-------------------RWSACTVQSFHHFLNGDTATC----------LHNAPHEDS 549
            ....|:                   .||.|            :.:|          |...|:.. 
  Rat  1007 CNSHGYIEEACIIPCPSDCKLSEWSNWSRC------------SKSCGSGVKVRSKWLREKPYNG- 1058

  Fly   550 ALGRSLPGTLLSLD----AQ------CRRDRGTYACFKDE-RVCAQLF------CFDAQTGYCVA 597
              ||..|    .||    ||      |..|...|....:. .||...|      |     |..|.
  Rat  1059 --GRPCP----KLDHVNQAQVYEVVPCHSDCNQYIWVTEPWSVCKVTFVDMRDNC-----GEGVQ 1112

  Fly   598 YRP--AAEGSACGNGYHCLDGRCTP-----------LP---SNIIPDYG--HNYRLVYNKIDNKK 644
            .|.  ..:.:|.|...|..|..|.|           ||   ..:|.::|  ....|..|...:::
  Rat  1113 TRKVRCMQNTADGPSEHVEDYLCDPEDMPLGSRECKLPCPEDCVISEWGPWTQCSLPCNPSGSRQ 1177

  Fly   645 DAAEDVESSSEETESQEDETESVEDQDEGTTSSEEQEDNKIEQSSAAGGAAAQSTTTARSTTTTT 709
            .:|:.:...::|..:..|   :||.:......:..:.|..:...|..       ..:.::.....
  Rat  1178 RSADPIRQPADEGRACPD---AVEKEPCNLNKNCYRYDYNVTDWSTC-------QLSEKAVCGNG 1232

  Fly   710 VRTTSTTTTTAKPKSKSFGYLHRSLPERQWMQDNGVLVTTRISSSVSSSSSGSSSGEAAATSTRR 774
            ::|.......:..||....|......|:.|..::...|...::..:|..|..|...:....:.:.
  Rat  1233 IKTRMLDCVRSDGKSVDLKYCEELGLEKNWQMNSSCTVECPLNCQLSDWSPWSECSQTCGLTGKM 1297

  Fly   775 PTTTTTTQ 782
            ....|.||
  Rat  1298 IRRRTVTQ 1305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sonaNP_001137746.1 ZnMc_salivary_gland_MPs 313..542 CDD:239800 36/186 (19%)
ADAMTS_CR_2 556..619 CDD:465496 19/81 (23%)
Thsd7aNP_001178899.2 TSP1_spondin 184..235 CDD:465948
TSP1_spondin 350..401 CDD:465948
TSP1_spondin 502..562 CDD:480609
TSP1_spondin 624..683 CDD:465948
TSP1_ADAMTS 688..756 CDD:465950
TSP1_spondin 1025..>1065 CDD:465948 9/58 (16%)
TSP1_ADAMTS 1088..1150 CDD:465950 13/66 (20%)
TSP1_spondin 1155..1206 CDD:465948 9/53 (17%)
TSP1_spondin 1276..1329 CDD:465948 6/30 (20%)
TSP1_spondin 1404..1463 CDD:480609
Blue background indicates that the domain is not in the aligned region.

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