DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sona and Adamtsl2

DIOPT Version :9

Sequence 1:NP_001137746.1 Gene:sona / 37762 FlyBaseID:FBgn0034903 Length:1102 Species:Drosophila melanogaster
Sequence 2:XP_038962070.1 Gene:Adamtsl2 / 311827 RGDID:1305459 Length:957 Species:Rattus norvegicus


Alignment Length:648 Identity:124/648 - (19%)
Similarity:180/648 - (27%) Gaps:283/648 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 GKGPKVNAA-----------LPPHHVKKDLSKNAYY--SELKHEALAS-GGNHLFAPEVSAIKSH 119
            ||.|.:...           |||          .||  ||...|:..| ....|.:..:.....|
  Rat   319 GKSPSITFEYTLLQSPHMHHLPP----------VYYSFSEAASESTESTERQELDSARLLGFLQH 373

  Fly   120 NVSFSAFGQHLNLSLRATQGLFKGAPHQLRMWTVGSEPNATHGLDLQEIVHEQHTSNDV------ 178
            |.|.  :||..:..|.....||.....::       |...:.|.:..|:.  :..|..|      
  Rat   374 NGSL--YGQPSSERLGLNSQLFPPTAPEV-------ELGPSRGQETNEVC--KQASGGVCEGPPR 427

  Fly   179 GEVFQDEKNMAAILMRRHMETGDLIMEGSIGHDLVIKPLPHELSPNPEESHHII----YKREASA 239
            |:.|||           |..||..::......::......|||......|..::    ...|.|.
  Rat   428 GKGFQD-----------HNATGRALLGDKDDREISAHFTSHELLSANTISDQLLGTGSDSEEFSL 481

  Fly   240 AEGQLSDFAFMEPDDLLASEKLERLQRRQRRSRRSAPSSPDFEDLNDEDEG----ALDGE----- 295
            .|...|.||...|                    ||:|:...:.|. :|:||    .::|.     
  Rat   482 NETMNSIFAQGAP--------------------RSSPAESLYVDY-EENEGPAAYLINGSYLELN 525

  Fly   296 -------------------PQVAESRTRSRRQAPYIIYPEVLVIVDYDGYRLHGGDNLQVKRYFI 341
                               |.:|.:||...|..|..              |..|.....:.|:.:
  Rat   526 SDRINTSSEAPFPNTSASLPSLAGNRTHKARTRPKA--------------RKQGVSPADMYRWKL 576

  Fly   342 SFWNGVDLRYRLLKGPRIRISIAGIIISRGRDATPYLERNRVGRDAIDSA--AALTDMGKYLFRE 404
            |           .:.|.......|::       :.|....|.....:|.:  .|||         
  Rat   577 S-----------SQEPCSATCTTGVM-------SAYAMCVRYDGVEVDDSYCDALT--------- 614

  Fly   405 RRLPVYDIAVAITKLDMCR---RTSAYGECNRGTAG----FAYVGGACVVNKRLEKVNSVAIIED 462
            |..||::....    ..|:   .||::.||:| |.|    |..|        |..|:.|...  |
  Rat   615 RPEPVHEFCAG----RECQPRWETSSWSECSR-TCGEGHQFRIV--------RCWKMLSPGF--D 664

  Fly   463 TGGFSGIIVAAHEVGHLLGAVHDGSPPPSYLGGPGAQR-CR-------WEDGYIMSDLRHTERGF 519
            :..:|.:..|...|                  .|..:: ||       ||    ||:        
  Rat   665 SSVYSDLCEATEAV------------------RPEERKTCRNPACGPQWE----MSE-------- 699

  Fly   520 RWSACTVQSFHHFLNGDTATCLHNAPHEDSALGRSLPGTLLSLDAQCRRDRGTYACFKDERVCAQ 584
             ||.|            ||.|     .|.|.:.|.:                  .|.:|||:|  
  Rat   700 -WSEC------------TAKC-----GERSVVTRDI------------------RCSEDERLC-- 726

  Fly   585 LFCFDAQTGYCVAYRPAAE--------------------GSACGNG-----YHC--LDGRCTP 620
                |..|      ||..|                    ..:||.|     .:|  .|||..|
  Rat   727 ----DPNT------RPVGEKNCTGPPCDRQWTVSDWGPCSGSCGQGRTIRHVYCKTSDGRVVP 779

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sonaNP_001137746.1 ZnMc_salivary_gland_MPs 313..542 CDD:239800 45/245 (18%)
Adamtsl2XP_038962070.1 TSP1 50..106 CDD:214559
ADAM_spacer1 216..330 CDD:368694 3/10 (30%)
TSP1_ADAMTS 632..691 CDD:408800 19/87 (22%)
TSP1_ADAMTS 695..743 CDD:408800 23/107 (21%)
TSP1_ADAMTS 747..800 CDD:408800 8/33 (24%)
TSP1_ADAMTS 804..860 CDD:408800
TSP1_ADAMTS 863..913 CDD:408800
PLAC 922..953 CDD:400844
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3538
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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