DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sona and Adamtsl4

DIOPT Version :9

Sequence 1:NP_001137746.1 Gene:sona / 37762 FlyBaseID:FBgn0034903 Length:1102 Species:Drosophila melanogaster
Sequence 2:XP_038958286.1 Gene:Adamtsl4 / 310670 RGDID:1561012 Length:1035 Species:Rattus norvegicus


Alignment Length:490 Identity:101/490 - (20%)
Similarity:152/490 - (31%) Gaps:160/490 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   479 LLGAVHDGSPPPSYLGGPGAQRCRWEDGYIMSDLRHTERGF-----RWSACTVQSFHHFLNGDTA 538
            ||....|....|..|.||..|....||        ....|.     ||::|: |.....:...:.
  Rat    18 LLQLCQDQEVSPGQLLGPSLQTPSEED--------QVPEGLWGPWGRWASCS-QPCGVGVQRRSR 73

  Fly   539 TC-LHNA-------------------------PHEDSALGRSLP----GTLLSLDAQCRRD---- 569
            || ||.|                         |.:..:|.|..|    |.|....:|..|:    
  Rat    74 TCELHPALSLPPRPPRHPEAPQPRGQGSRPQTPRDPQSLYRPQPRGRGGPLRGPASQVGREETQE 138

  Fly   570 -RGTYACFKDERVCAQLFCFDAQTGYCVAYRPAAEGSACGNGYHCLDGR---CTPLPSNIIPDYG 630
             ||           ||.|         ....|...|..   ||    ||   ..||         
  Rat   139 PRG-----------AQRF---------RVRDPIKPGMF---GY----GRVPFALPL--------- 167

  Fly   631 HNYRLVYNKIDNKKDAAEDVESSSEETESQEDETESVEDQDEGTTSSEEQEDNKIEQSSAAGGAA 695
            |..|.:.:|....||:     |::|||         :..|...|..:.|:....::.......:.
  Rat   168 HRSRRLAHKPGQPKDS-----STAEET---------LPSQPPSTEPASEKHSPHMQPPELRAQSR 218

  Fly   696 AQSTTTARSTTTTTVRTTSTTTTTAKPKSKSFGYLHRSLPERQWMQDNGVLVTTRISSSVSSSSS 760
            :.|..|.||   .|.:|...:.|::.|                  .|.|:...|   ||...|.|
  Rat   219 SPSAETPRS---GTAQTEVPSRTSSAP------------------SDMGIPAPT---SSFRDSRS 259

  Fly   761 GSSSGEAAATSTRRPTTTTTTQTPNLFQIYTHELRKQIEYYLHMLQTQQHATKFQPEQQQQQSQQ 825
            ...|.|     .|.||:....:.|:.|...|   |.|:        :::|   ::|.....:|..
  Rat   260 FQGSPE-----PRMPTSQGAERQPHPFSPVT---RSQL--------SRRH---WRPPGSPHRSPD 305

  Fly   826 QQSIVEIPLVQKSLTNYSVTSSSSSTSNGAKQQPPSNKDENQRQQQQQQQAQQQLQDGLPDEENE 890
            ..    :||.:.|..::|:.:.||.|..      .|.:.|..|...|:....:|     ||....
  Rat   306 GW----LPLTRDSSPHWSLFAPSSPTPE------CSGESEQMRACSQEPCPPEQ-----PDPRAL 355

  Fly   891 ATAGIQSNEAIERQKRKFPTTPTAATSAAQKSATP 925
            ..|...|.|.:.:..:..|.|....:...:.:..|
  Rat   356 QCAAFDSQEFMGQLYQWEPFTEVQGSQRCELNCRP 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sonaNP_001137746.1 ZnMc_salivary_gland_MPs 313..542 CDD:239800 17/68 (25%)
Adamtsl4XP_038958286.1 PHA03247 <24..358 CDD:223021 93/450 (21%)
ADAM_spacer1 451..564 CDD:368694
TSP1_ADAMTS 637..686 CDD:408800
TSP1_ADAMTS 690..746 CDD:408800
TSP1_ADAMTS 754..804 CDD:408800
TSP1_ADAMTS 808..869 CDD:408800
TSP1_ADAMTS 875..931 CDD:408800
TSP1_ADAMTS 935..986 CDD:408800
PLAC 994..1023 CDD:400844
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3538
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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