DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sona and adamtsl3

DIOPT Version :9

Sequence 1:NP_001137746.1 Gene:sona / 37762 FlyBaseID:FBgn0034903 Length:1102 Species:Drosophila melanogaster
Sequence 2:XP_012814972.2 Gene:adamtsl3 / 100493011 XenbaseID:XB-GENE-923351 Length:1777 Species:Xenopus tropicalis


Alignment Length:931 Identity:158/931 - (16%)
Similarity:260/931 - (27%) Gaps:389/931 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   430 ECNRGTAGFAYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPPPSYLG 494
            |.|..||.....||.  :.:|     |:..:|:|  ..|.|:...|...:.      :|.|:.: 
 Frog   434 EHNPWTACSVSCGGG--IQRR-----SIVCVEET--MHGEILQVEEWKCMY------APKPTIM- 482

  Fly   495 GPGAQRC------RWEDGYIMSDLRHTERGFRWSACTVQSFHHFLNGDTATCLHNAPHEDSALGR 553
                |.|      :|             ....||.|||            ||           ||
 Frog   483 ----QTCNLFDCPKW-------------MAMEWSQCTV------------TC-----------GR 507

  Fly   554 SLPGTLLSLDAQCRRDRG--TYAC-------FKDERVCAQLFCF--------------------- 588
            .|...::    .|...||  |..|       .|:|.| ..:.||                     
 Frog   508 GLRYRVV----LCNDHRGQHTGGCNPQLKPHIKEECV-VPVPCFKPRERFPVEAKHPWLKQAQEL 567

  Fly   589 -------DAQTGYCVAYRPAAEGSACGNGYHCLDGRCTPLPSNIIPDYGHNYRLVYNKIDNKKDA 646
                   |..|....|:.|.:  .:||.|......:|..|.|                     ..
 Frog   568 EETKTASDEPTFIPEAWSPCS--VSCGRGMQVRQVKCRILLS---------------------FT 609

  Fly   647 AEDVESSSEETESQEDETESV-----EDQDEGTTSSEEQEDNKIEQ-------------SSAAGG 693
            ..::|...||.|.::.:||..     .:.|.||.:||.. .:.||.             ||:..|
 Frog   610 QTELELPDEECEEEKPDTERACYLLPCEGDPGTQTSEHL-PHDIESPLYDWEYIGFTSCSSSCSG 673

  Fly   694 AAAQSTTTARSTTTTTVRTTSTTTTTAKPKSKSFGYLHRSLPER----QWMQDN---GVLVTTR- 750
            ...::.....:..|......|...::.:|.:.:.....:..|.|    .|.:.:   ||.:.|| 
 Frog   674 GRQEAIAVCLNMQTKQSVNNSLCDSSVRPPAMTRACNTKLCPPRWNTGSWSRCSATCGVGIQTRD 738

  Fly   751 -ISSSVSSSSSGS---------------------------------------------------- 762
             ..||||.|.:.|                                                    
 Frog   739 VYCSSVSESGNNSEQECGAEKPSAIQPCNQIDCPPAWHTEDWQQCSRTCGGGVQIRRVTCKQLLA 803

  Fly   763 --------------------------------SSGEAAATST--------RRPTTTTTTQTPNLF 787
                                            ::||.:..||        |:......|...:|.
 Frog   804 DGSFLKLGDELCQMQKPGSHKPCGKADCPPQLTTGEWSKCSTKCSVGIQRRKMICLKITAKGHLI 868

  Fly   788 QI---YTHELRKQI---EYYLHMLQTQQH--ATKFQPEQQQ--------QQSQQQQSI------- 829
            .|   :.|.|....   ..::.:.||:||  ..:..||..:        .|::|::.|       
 Frog   869 PINDSHCHGLPSPALVRSCHMGVCQTKQHNPNRETSPESPEILSIHRVYIQTRQEKRINFTIGSR 933

  Fly   830 ----------VEIPL--VQKSLTNY-------------SVTSSSS-------------------- 849
                      ::.|:  :||||..:             .||.|.|                    
 Frog   934 AYLLPKTSVVIKCPVRGIQKSLIKWEKDDQPLKYSKKLGVTKSGSLKIHNLEAQDIGVYKCIANS 998

  Fly   850 ----------STSNGAKQQPPSNKDENQRQ-------------QQQQQQAQQQLQDGLPDEE--- 888
                      ...|...:.|...||.|:..             :...::....|:|....||   
 Frog   999 AHETFVLKLIGRDNRLLEAPSFEKDHNEANNLGAKWHKMSKMWKSWNKKNNLYLEDSQAQEELVL 1063

  Fly   889 -NEATAGIQSNEAIERQKRKFPTTPTAATSAAQKSATPATPATSATSARPTPTTAKPITTSSFLD 952
             |..|....|.|....|..|......|....|..                       :.|:.| :
 Frog  1064 RNLETLVSNSAEVYGSQDFKEKRLEAAVLQGAYS-----------------------MDTAQF-E 1104

  Fly   953 AYFKKLQALHDAGSASSSTTTTTTTSVSSSVSSATSSKQQHPQQQQQQQVQQIADGSHFLKRTPH 1017
            |..|.:..|.:||..|....:...:.|.:.:     ||.|....:.:|..:.....:.::.:.|:
 Frog  1105 ALVKNMSELIEAGEISDDFASQIISHVVNEL-----SKPQSTTDKWKQTTENNKSDTKYINKEPY 1164

  Fly  1018 RSSLKAYKTSSSSSNNSSSQTQQ--QQQQQQQQYATN-----YIGDT---TNNQPAV---LDNSG 1069
            .|   .:.....:...|..|.||  ::|:..|..:||     .||::   |||...:   .:.:|
 Frog  1165 AS---VHFNIKDAEVESGKQWQQIIRKQKPGQVMSTNRTLHLIIGNSAFFTNNTQRITIQCEVAG 1226

  Fly  1070 SASSTTETAK--KPKIKTQKL 1088
            .:.:....||  :|...::|:
 Frog  1227 DSITKITWAKDGEPLTSSEKI 1247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sonaNP_001137746.1 ZnMc_salivary_gland_MPs 313..542 CDD:239800 25/117 (21%)
adamtsl3XP_012814972.2 TSP1 89..135 CDD:214559
TSP1_ADAMTS 354..412 CDD:408800
TSP1_ADAMTS 433..490 CDD:408800 17/75 (23%)
TSP1_ADAMTS 493..545 CDD:408800 19/92 (21%)
TSP1_ADAMTS 579..636 CDD:408800 14/79 (18%)
TSP1_ADAMTS 718..771 CDD:408800 11/52 (21%)
TSP1_ADAMTS 775..831 CDD:408800 0/55 (0%)
TSP1_ADAMTS 837..892 CDD:408800 10/54 (19%)
Ig 943..999 CDD:416386 9/55 (16%)
Ig strand C 955..960 CDD:409353 1/4 (25%)
Ig strand C' 962..965 CDD:409353 0/2 (0%)
Ig strand D 970..974 CDD:409353 0/3 (0%)
Ig strand E 977..983 CDD:409353 1/5 (20%)
Ig strand F 990..998 CDD:409353 0/7 (0%)
Ig 1216..1285 CDD:416386 5/32 (16%)
Ig strand B 1216..1225 CDD:409353 0/8 (0%)
Ig strand C 1231..1235 CDD:409353 0/3 (0%)
Ig strand C' 1238..1240 CDD:409353 0/1 (0%)
Ig strand D 1248..1252 CDD:409353 158/931 (17%)
Ig strand E 1253..1258 CDD:409353
Ig strand F 1266..1274 CDD:409353
Ig 1318..1382 CDD:416386
Ig strand B 1322..1329 CDD:409353
Ig strand C 1337..1341 CDD:409353
Ig strand D 1353..1356 CDD:409353
Ig strand E 1357..1362 CDD:409353
Ig strand F 1370..1378 CDD:409353
Ig_3 1416..1489 CDD:404760
Ig strand C 1443..1447 CDD:409353
Ig strand E 1468..1472 CDD:409353
Ig strand F 1482..1487 CDD:409353
TSP1_ADAMTS 1508..1562 CDD:408800
TSP1_ADAMTS 1566..1623 CDD:408800
TSP1_ADAMTS 1626..1682 CDD:408800
TSP1_ADAMTS 1686..1740 CDD:408800
PLAC 1745..1774 CDD:400844
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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