DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde8 and pde4a

DIOPT Version :9

Sequence 1:NP_001163275.2 Gene:Pde8 / 37741 FlyBaseID:FBgn0266377 Length:1050 Species:Drosophila melanogaster
Sequence 2:XP_009298019.1 Gene:pde4a / 572061 ZFINID:ZDB-GENE-131125-7 Length:777 Species:Danio rerio


Alignment Length:555 Identity:156/555 - (28%)
Similarity:251/555 - (45%) Gaps:117/555 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   567 PQPKEAPRGS-------LH-----SVRRCSFDVRSIASDGLRRTSLAKLTSLPLE--------AP 611
            |.|..:|..|       ||     |.||.||..||.:...:...::::.:|:..|        .|
Zfish   106 PSPGRSPMDSQASPGLVLHPSFPQSQRRESFLYRSDSDYDMSPKTMSRNSSINSEGHAEDLIVTP 170

  Fly   612 ITKIINLLSQVQENC---------------------SADEARLIDKVLEFLKREGLYS-----PQ 650
            ..:::..|..|:.|.                     :...|.|.|:..:.|.||.|..     .|
Zfish   171 FAQVLASLRTVRSNFTILANVTTPTTTMRSPVTSQPTVPPATLSDETYQQLARETLEELDWCLDQ 235

  Fly   651 MKEIRTD---DPIATDLIGALLTGPSVYSSRRSSNDSIIR------------------------- 687
            ::.|:|.   ..:|::....:|.....:.|..|.:.:.:.                         
Zfish   236 LETIQTHRSVSEMASNKFKRMLNRELSHLSEMSRSGNQVSEYISTTFLDKQNEVEIPSPTLRERE 300

  Fly   688 ------------TGSSTRTAAIVP---AKMKSNPIIMELLDESLSWDFDIFKLEEITDYHPLLYL 737
                        |.||:.|:|.:|   .|.:....:...|::...|..:||.:.|.::..||..:
Zfish   301 KPMSHISGVKKLTHSSSLTSAALPRFGVKTEQEDALARELNDLNKWGLNIFHVAEFSNNRPLSCI 365

  Fly   738 GMEMFRRFDVFATLNIDENVCKAWLAVIEAHYRKSNTYHNSTHAADVMQATGAFITQLTNKDMLV 802
            ...:|:..|:..|..|..:....::..:|.||..:..||||.|||||.|:|...::  |.....|
Zfish   366 MFAIFQERDLLKTFRIPVDTFITYVMTLEDHYHANVAYHNSLHAADVTQSTHVLLS--TPALDAV 428

  Fly   803 MDRMEEATALIAAAAHDVDHPGRSSAFLCNSNDALAVLYNDLTVLENHHAAITFKLTLGDDKINI 867
            ...:|...||.|||.|||||||.|:.||.|:|..||::|||.:||||||.|:.||| |.::..:|
Zfish   429 FSDLEILAALFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKL-LHEENCDI 492

  Fly   868 FKNLDKETYKSARSTIIDMILATEMTRHFEHLAKFVSVFGGEEPRDHNPQTDEETS--------- 923
            |:||.|...:|.|..:|||:|||:|::|...||...::.          :|.:.||         
Zfish   493 FQNLTKRQRQSLRKLVIDMVLATDMSKHMSLLADLKTMV----------ETKKVTSSGVLMLDHY 547

  Fly   924 ---ILMRRMLIKVADVSNPARPMQFCIEWARRIAEEYFMQTDEEKQRHLPIVMPMFDRATCSIPK 985
               |.:.|.::..||:|||.:|:....:|..||.||:|.|.|:|::|.:.| .||.|:.|.|:.|
Zfish   548 NDRIQVLRNMVHCADLSNPTKPLAVYRQWTERIMEEFFQQGDKERERGMEI-SPMCDKHTASVEK 611

  Fly   986 SQIGFIEYIIQDMMHAWESFI--DMPQLITYMQIN 1018
            ||:|||:||:..:...|...:  |..:::..::.|
Zfish   612 SQVGFIDYIVHPLWETWGDLVHPDAQEILDTLEDN 646

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde8NP_001163275.2 PAS 459..539 CDD:238075
PAS_9 463..539 CDD:290162
PDEase_I 775..1016 CDD:278654 101/254 (40%)
pde4aXP_009298019.1 PDEase_I 403..644 CDD:278654 101/254 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170589326
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 1 1.000 - - FOG0000302
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.850

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