DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde8 and pde3a

DIOPT Version :9

Sequence 1:NP_001163275.2 Gene:Pde8 / 37741 FlyBaseID:FBgn0266377 Length:1050 Species:Drosophila melanogaster
Sequence 2:XP_009298269.1 Gene:pde3a / 567051 ZFINID:ZDB-GENE-041210-23 Length:1124 Species:Danio rerio


Alignment Length:558 Identity:148/558 - (26%)
Similarity:233/558 - (41%) Gaps:131/558 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   566 LPQPKEAPRGSLHSVRRCSFDVRSIASDGLRRTSLAKLTSLPLEAPITKIINLLSQVQENCSADE 630
            ||.|:..|..|.|.              .|..:..|..:|..|..|.|.:.:       :|....
Zfish   496 LPDPELPPPRSPHK--------------ALTHSQSAPSSSAALWPPPTPLCS-------SCGRPY 539

  Fly   631 ARLIDKVLEFLKR--EGLYSPQMKEIRTDDPIATDLIGALLTG--PSVYSSRRSSNDSIIRTG-- 689
            ::         :|  :|...|..:..::|:|       |:::.  .|.|.:..|.:....:|.  
Zfish   540 SK---------QRHSDGSTEPAERTQQSDEP-------AMMSSDYDSTYETNHSDSSDFAQTDED 588

  Fly   690 -SSTRT---AAIVPAKMK----SNPIIMELLDESL----SWDFDIFKLEEITDYHPLLYLGMEMF 742
             .:.||   |.::||:.|    ..|::||.|:..|    :|:|.||.|.|.|:......|....:
Zfish   589 REARRTLTLATLIPAEEKPILAPEPLLMEGLEPLLCQINNWNFPIFSLVEKTNGRCGCILSQMSY 653

  Fly   743 RRF---DVFATLNIDENVCKAWLAVIEAHYRKSNTYHNSTHAADVMQATGAFITQ---------- 794
            |.|   .:|.|..|.......:...:|..|| ...|||..||.||:.|.....||          
Zfish   654 RLFVDTGLFETFKIPVREFMNYFHALENGYR-DIPYHNRIHATDVLHAVWYLTTQPVPGLPTLRT 717

  Fly   795 LTNKDM---LVMDRME------------------------EATAL-IAAAAHDVDHPGRSSAFLC 831
            |.:.|.   |...||:                        |..|| :|||.||.|||||::|||.
Zfish   718 LGSSDSDSGLAHGRMKYLMSRTNAVEEEGYGCLSGLIPALELMALYVAAAMHDYDHPGRTNAFLV 782

  Fly   832 NSNDALAVLYNDLTVLENHHAAITFKLTLGDDKINIFKNLDKETYKSARSTIIDMILATEMTRHF 896
            .::...||||||.:||||||||..:.|.:...:.|...:||...:|..|..:|:.||||::.:||
Zfish   783 ATSAPQAVLYNDRSVLENHHAASAWNLFMSRPEYNFLASLDHMEFKRFRFLVIEAILATDLKKHF 847

  Fly   897 EHLAKFVSVFGGEEPRDHNPQTDEETSILMRRMLIKVADVSNPARPMQFCIEWARRIAEEYFMQT 961
            :.||:| :...|::.......|:|...:|:.:|.||:||::.|.:.....::|...|..|::.|.
Zfish   848 DFLAEF-NAKVGDDGCSGIDWTNENDRLLVCQMCIKLADINGPLKCKDLHLQWTEGIVNEFYEQG 911

  Fly   962 DEEKQRHLPIVMPMFDRATCSIPKSQIGFIEYIIQDMMHAWESFIDMPQLITYMQINYSQW---- 1022
            |||....||| .|..||:...:.|.|..||.:|:..:..:::|...||          .:|    
Zfish   912 DEESSLGLPI-SPFMDRSAPQLAKLQESFITHIVGPLCSSYDSAALMP----------GRWVHPL 965

  Fly  1023 ------------------KKYDEQGVNTLAEIMAKQPP 1042
                              .:.:|:..:|.:|:..|..|
Zfish   966 PKDGDEVEDESEEEDEDTAEEEEEDASTSSELSQKPAP 1003

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde8NP_001163275.2 PAS 459..539 CDD:238075
PAS_9 463..539 CDD:290162
PDEase_I 775..1016 CDD:278654 92/278 (33%)
pde3aXP_009298269.1 PDEase_I 688..947 CDD:278654 89/260 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170589315
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.850

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