DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde8 and pde4d

DIOPT Version :9

Sequence 1:NP_001163275.2 Gene:Pde8 / 37741 FlyBaseID:FBgn0266377 Length:1050 Species:Drosophila melanogaster
Sequence 2:XP_009302145.1 Gene:pde4d / 566998 ZFINID:ZDB-GENE-081105-16 Length:769 Species:Danio rerio


Alignment Length:576 Identity:167/576 - (28%)
Similarity:258/576 - (44%) Gaps:125/576 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   553 FDVPGGQMDFIATLPQPKEAPRGSL-------HSVRRCSFDVR----------------SIASD- 593
            |||..|.....:.| .|..:|...|       ||.||.||..|                ||||| 
Zfish    87 FDVDNGTSSGRSPL-DPMASPGSGLILQANFVHSQRRESFLYRSDSDYDLSPKSMSRNSSIASDI 150

  Fly   594 ---------------GLR--RTSLAKLTSLPLE------------APITK--------------- 614
                           .||  |.:.|.||::..|            .||||               
Zfish   151 HGDDMIVTPFAQVLASLRTVRNNFAALTNVQQERSNNKRSPMCNPPPITKTSYTEEAYQKLATET 215

  Fly   615 ------IINLLSQVQENCSADEARLIDKVLEFLKREGLYSPQMKEIRTDDPIATDLIGALLTG-- 671
                  .::.|..:|...|..| ...:|....|.||..:..:|.  |:.:.::..:....|..  
Zfish   216 LEELDWCLDQLETLQTRHSVSE-MASNKFKRMLNRELTHLSEMS--RSGNQVSEYISSTFLDKQN 277

  Fly   672 ----PSVYS-------SRRSSNDSIIR--TGSSTRTAAIVP---AKMKSNPIIMELLDESLSWDF 720
                ||..|       .|..|..|.::  |.||:.|.:.:|   .|.::...:.:.|::...|..
Zfish   278 EVEMPSPQSQKDKEKKKRPMSQISGVKKLTHSSSLTNSNIPRFGVKTETEDELAKELEDVNKWGL 342

  Fly   721 DIFKLEEITDYHPLLYLGMEMFRRFDVFATLNIDENVCKAWLAVIEAHYRKSNTYHNSTHAADVM 785
            ::||:.|.:...||..:...:|:..|:..|..|..:....:|..:|.||.....|||:.|||||.
Zfish   343 NVFKVSEFSGNRPLTVMMYTIFQERDLLKTFKIPLDTFITYLMTLEDHYHADVAYHNNIHAADVT 407

  Fly   786 QATGAFITQLTNKDMLVMDRMEEATALIAAAAHDVDHPGRSSAFLCNSNDALAVLYNDLTVLENH 850
            |:|...::  |.....|...:|...|:.|:|.|||||||.|:.||.|:|..||::|||.:|||||
Zfish   408 QSTHVLLS--TPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENH 470

  Fly   851 HAAITFKLTLGDDKINIFKNLDKETYKSARSTIIDMILATEMTRHFEHLAKFVSVFGGEEPRDHN 915
            |.|:.||| |.::..:||:||.|:..:|.|..:||::|||:|::|...||...::.         
Zfish   471 HLAVGFKL-LQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMV--------- 525

  Fly   916 PQTDEETS------------ILMRRMLIKVADVSNPARPMQFCIEWARRIAEEYFMQTDEEKQRH 968
             :|.:.||            |.:.:.::..||:|||.:|:|...:|..||.||:|.|.|.|::|.
Zfish   526 -ETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFSQGDRERERG 589

  Fly   969 LPIVMPMFDRATCSIPKSQIGFIEYIIQDMMHAWESFI--DMPQLITYMQINYSQW 1022
            :.| .||.|:...|:.|||:|||:||:..:...|...:  |...::..::.| .:|
Zfish   590 MEI-SPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDN-REW 643

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde8NP_001163275.2 PAS 459..539 CDD:238075
PAS_9 463..539 CDD:290162
PDEase_I 775..1016 CDD:278654 96/254 (38%)
pde4dXP_009302145.1 PDEase_I 397..634 CDD:306695 96/250 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170589327
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 1 1.000 - - FOG0000302
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.850

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