DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde8 and pde4ba

DIOPT Version :9

Sequence 1:NP_001163275.2 Gene:Pde8 / 37741 FlyBaseID:FBgn0266377 Length:1050 Species:Drosophila melanogaster
Sequence 2:XP_021332832.1 Gene:pde4ba / 565706 ZFINID:ZDB-GENE-030131-9570 Length:734 Species:Danio rerio


Alignment Length:676 Identity:175/676 - (25%)
Similarity:280/676 - (41%) Gaps:191/676 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   458 RLKEVVLITDDLLRIQYANRATERLLNMRLDEIISKQLE------DIFVSDLSTISEQCKNIKEF 516
            ||.|....:...|.:....|......|::|..:..:|:|      |.|::..:|:.         
Zfish    23 RLSESFTSSGCTLGVDLRRRRRRFSGNLQLPPLSWRQMERSRSPDDEFMARPTTLP--------- 78

  Fly   517 DGILTVRRKSQEGIPMHVRVVPV--ACIGSAPTHLIFNFDVPGGQMDFIATLPQPKEAPRGSL-- 577
              .:|         |..:.:.||  .|           |||..|.....:.| .|:.:|...|  
Zfish    79 --FIT---------PPRIDITPVDTEC-----------FDVENGPSASCSPL-DPQASPGSGLVL 120

  Fly   578 ------HSVRRCSFDVRSIASDGLRRTSLAKLTSLPLE--------APITKIINLLSQVQEN--- 625
                  |:.||.||..||.:...|...|:::.:|:..|        .|..:::..|..|:.|   
Zfish   121 HTNFPGHNQRRESFLYRSDSDYDLSPKSMSRNSSVASELHGDDLIVTPFAQVLASLRSVRNNFTV 185

  Fly   626 -----------------------CSADEA------------------------------------ 631
                                   |..||:                                    
Zfish   186 LTNVQCTSNKRSPVSNQPSITRVCLPDESYQKLAVETMEELDWCLDQLETIQTYRSVSDMASNKF 250

  Fly   632 -RLIDK--------------VLEFLKREGL----------YSPQMKEIRTDDPIATDLIGA--LL 669
             |::::              |.||:....|          .:|:.:|.:....:.|.:.|.  :.
Zfish   251 KRMLNRELTHLSEMSRSGNQVSEFISNTFLDKQNDVEIPSPTPKAREKKKKQQLMTQISGVKKVS 315

  Fly   670 TGPSVYSSRRSSNDSIIRTGSSTRTAAIVPAKMKSNPIIMELLDESLSWDFDIFKLEEITDYHPL 734
            .|||:       |..|.|.|          .|.....::.:.|::...|..:||.:.|.::..||
Zfish   316 HGPSL-------NCGIARFG----------VKTDKEDLLSKELEDLNRWGLNIFTVSEYSNNRPL 363

  Fly   735 LYLGMEMFRRFDVFATLNIDENVCKAWLAVIEAHYRKSNTYHNSTHAADVMQATGAFITQLTNKD 799
            ..:...:|:..|:..|..|..:....::..:|.||.:...||||.|||||.|:|...::  |...
Zfish   364 TCIMYAIFQERDLLKTFKIPTDTFVTYMMTLEDHYHQDVAYHNSLHAADVAQSTHILLS--TPAL 426

  Fly   800 MLVMDRMEEATALIAAAAHDVDHPGRSSAFLCNSNDALAVLYNDLTVLENHHAAITFKLTLGDDK 864
            ..|...:|...|:.|||.|||||||.|:.||.|:|..||::|||.:||||||.|:.||| |.:|.
Zfish   427 DAVFTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKL-LQEDN 490

  Fly   865 INIFKNLDKETYKSARSTIIDMILATEMTRHFEHLAKFVSVFGGEEPRDHNPQTDEETS------ 923
            .:||:||.|:...|.|..:|||:|||:|::|...||...::.          :|.:.||      
Zfish   491 CDIFQNLTKKQRTSLRRMVIDMVLATDMSKHMSLLADLKTMV----------ETKKVTSSGVLLL 545

  Fly   924 ------ILMRRMLIKVADVSNPARPMQFCIEWARRIAEEYFMQTDEEKQRHLPIVMPMFDRATCS 982
                  |.:.|.::..||:|||.:.::...:|..||.||:|.|.|.|::|.:.| .||.|:.|.|
Zfish   546 DNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEEFFHQGDRERERGMEI-SPMCDKHTAS 609

  Fly   983 IPKSQIGFIEYIIQDMMHAWESFIDM 1008
            :.|||:|||:||:..:   ||::.|:
Zfish   610 VEKSQVGFIDYIVHPL---WETWADL 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde8NP_001163275.2 PAS 459..539 CDD:238075 13/85 (15%)
PAS_9 463..539 CDD:290162 11/81 (14%)
PDEase_I 775..1016 CDD:278654 101/246 (41%)
pde4baXP_021332832.1 PDEase_I 404..641 CDD:306695 101/246 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 1 1.000 - - FOG0000302
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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