DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde8 and pde4ca

DIOPT Version :9

Sequence 1:NP_001163275.2 Gene:Pde8 / 37741 FlyBaseID:FBgn0266377 Length:1050 Species:Drosophila melanogaster
Sequence 2:XP_009296827.1 Gene:pde4ca / 565259 ZFINID:ZDB-GENE-070912-373 Length:742 Species:Danio rerio


Alignment Length:556 Identity:156/556 - (28%)
Similarity:259/556 - (46%) Gaps:96/556 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   496 EDIFVSDLSTISEQCKNIKEFDGILTVRRKSQEGIPMHVRV---VPVACIGSAPTH-----LIFN 552
            ||:.|:..:.:....:.::....:||   ..|:.:|.....   .|..|..|.|..     .:..
Zfish   131 EDMIVTPFAQVLASLRTVRSNFAVLT---HQQDRVPSKKSTGNNPPSMCKTSLPEEPFQKLAVET 192

  Fly   553 FDVPGGQMDFIATLPQPKEAPRGSLHSVRRCSFDVRSIASDGLRRTSLAKLTSLPLEAPITKIIN 617
            .|.....::.:.||.        :.||       |..:||:..:|....:||.|   :..:|..|
Zfish   193 LDELDWCLEQLETLK--------TRHS-------VSEMASNKFKRMLNRELTQL---SETSKSGN 239

  Fly   618 LLSQVQENCSADEARLIDKVLEFLKREG----LYSPQMKEIRTDDPIATDLIGALLTGPSVYSSR 678
               ||.|..|:          .||:::.    :.:|..::.:...|::.      ::|  |....
Zfish   240 ---QVSEYISS----------TFLEKQHDMDIMSTPSKEKEKKKRPMSQ------ISG--VKKPT 283

  Fly   679 RSSN---DSIIRTGSSTRTAAIVPAKMKSNPIIMELLDESLSWDFDIFKLEEITDYHPLLYLGME 740
            .|||   .||.|.|.||          ....::.:.|::...|..|:||:.|.:...||......
Zfish   284 HSSNIAPSSIPRFGVST----------NREDLLAKELEDFDRWGVDMFKISECSGNRPLTVAMYT 338

  Fly   741 MFRRFDVFATLNIDENVCKAWLAVIEAHYRKSNTYHNSTHAADVMQATGAFITQLTNKDMLVMDR 805
            .|:..|:..:..|..:....::..:|.:||....||||.|||||:|:|...::  |.....|...
Zfish   339 TFQERDLLKSFKIPVDTFINYMTALEENYRSDVAYHNSIHAADVVQSTHVLLS--TPALEAVFTD 401

  Fly   806 MEEATALIAAAAHDVDHPGRSSAFLCNSNDALAVLYNDLTVLENHHAAITFKLTLGDDKINIFKN 870
            :|...|:.|:|.|||||||.|:.||.|:|..||::|||.:||||||.|:.||| |.::..:||:|
Zfish   402 LEILAAMFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKL-LQEENCDIFQN 465

  Fly   871 LDKETYKSARSTIIDMILATEMTRHFEHLAKFVSVFGGEEPRDHNPQTDEETS------------ 923
            |.|:..:|.|..:|||:|||:|::|...||...::.          :|.:.||            
Zfish   466 LTKKQRQSLRKMVIDMVLATDMSKHMNLLADLKTMV----------ETKKVTSLGVLLLDNYSDR 520

  Fly   924 ILMRRMLIKVADVSNPARPMQFCIEWARRIAEEYFMQTDEEKQRHLPIVMPMFDRATCSIPKSQI 988
            |.:.:.::..||:|||.:|::...:|..||..|:|.|.|.|:.:.:.| .||.|:...||.|||:
Zfish   521 IQVLQNMVHCADLSNPTKPLELYRQWTDRIMVEFFTQGDRERDKGMEI-SPMCDKHNASIEKSQV 584

  Fly   989 GFIEYIIQDMMHAWESFI--DMPQLITYMQINYSQW 1022
            |||:||:..:...|...:  |..:::..::.| .:|
Zfish   585 GFIDYIVHPLWETWADLVHPDAQEILDTLEDN-REW 619

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde8NP_001163275.2 PAS 459..539 CDD:238075 7/45 (16%)
PAS_9 463..539 CDD:290162 7/45 (16%)
PDEase_I 775..1016 CDD:278654 96/254 (38%)
pde4caXP_009296827.1 PDEase_I 373..610 CDD:306695 96/250 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170589325
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 1 1.000 - - FOG0000302
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.850

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