DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde8 and Pde6c

DIOPT Version :9

Sequence 1:NP_001163275.2 Gene:Pde8 / 37741 FlyBaseID:FBgn0266377 Length:1050 Species:Drosophila melanogaster
Sequence 2:NP_001101992.1 Gene:Pde6c / 361752 RGDID:1309844 Length:861 Species:Rattus norvegicus


Alignment Length:896 Identity:197/896 - (21%)
Similarity:345/896 - (38%) Gaps:195/896 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   227 HAEEEPLTPGHDHEDSVVLRRKVNCLERKAHSLYERR----LPRVPKLHLLVAGKKNPPTEEEEF 287
            |.::|  |...:......|:|....|:.:..|::..|    :|.|....|.|.     ||.:   
  Rat    68 HMQDE--TGSAEQVAHRALQRLARLLQAECCSMFSCRSRNGIPEVASRLLNVT-----PTSK--- 122

  Fly   288 RTFQRNLMDLKYPTVLPPNPPLKALLVFHKSDSICEAITAACQRHQLDVTLVKSKEEALDTLQK- 351
              |:.||:......|.|.:..:...:...|.              .|:|:.||......|.:.| 
  Rat   123 --FEDNLVAPNREVVFPLDIGIVGWVAHVKK--------------ALNVSNVKKNSHFSDFMDKQ 171

  Fly   352 -SYATAQCYHLIIIDARSSKNLDAEHIARTIRHTHGHHLTTIIAVCK---KSFFEKDD------- 405
             .|.|.   :|:.:...:.|.:                |..::||.|   ..|.::|:       
  Rat   172 TGYVTR---NLLAVPIMTGKEV----------------LAVVMAVNKINAPEFSKQDEEVFSKYL 217

  Fly   406 --VLIALLDAGVNRCVAETTNLAMCSVELKQILHSIIRPHNVMSTQQALYTALHRLKEVVLITDD 468
              |.|||.       :..|:.|........|||               :::|....:|:..:...
  Rat   218 SFVAIALR-------LQHTSYLYSVESRRSQIL---------------MWSANKVFEELTDVERQ 260

  Fly   469 LLRIQYANRA---TERLLNMRLDEIISKQLEDIFVSDLSTISEQCKNIKEFDGILTVRRKSQEGI 530
            ..:..|..|.   .||.....||....|:..|.:...|..: |..|..|..||...:..|..:.|
  Rat   261 FHKALYTVRTYLNCERYSIGLLDMTKEKEFYDEWPIKLGEV-EPYKGPKTPDGREIIFYKIIDYI 324

  Fly   531 PMH----VRVVPV------ACIGSAPTHLIFNFDVPGGQMDFIATLPQPKEAPRGSLHSVRRCSF 585
             :|    :.|:|.      ..:...||::..|        .||..:   ..||.....:.::...
  Rat   325 -LHGKEEISVIPSPPADHWTLVSGLPTYIAEN--------GFICNM---MNAPADEYFTFQKGPV 377

  Fly   586 DVRSIASDGLRRTSLAKLTSLPLEAPITKIINLLS--QVQENCSADE--ARLIDKVLEFLKREGL 646
            |.....        :..:.|||:......|:.:.:  ..::....||  ..:.:.:.:||....|
  Rat   378 DETGWV--------IKNVLSLPIVNKKEDIVGVATFYNRKDGKPFDEHDEHITETLTQFLGWSLL 434

  Fly   647 YS---PQMKEIRTDDPIATDLIGALLTG-PSVYSS----RRSSNDSIIRTGSSTRTAAIVPAKMK 703
            .:   .::.::.:...||.::|..|... ||..||    :...|..:|......:..||:..:: 
  Rat   435 NTDTYERVNKLESRKDIAQEMIMNLTKATPSEISSILKFKEKLNIDVIEECEERQLLAILKEEL- 498

  Fly   704 SNPIIMELLDESLSWDFDIFKLEEITDYHPLLYLGMEMFRRFDVFATLNIDENVCKAWLAVIEAH 768
            .:|...:|.:...| ||.:.:       |.|:..|:.:|...:|.....:...|...|:..:...
  Rat   499 PDPRAADLYEFRFS-DFPVTE-------HELVKCGLRLFLEINVVEKFKVPVEVLTRWMYTVRKG 555

  Fly   769 YRKSNTYHNSTHAADVMQATGAFITQLTNKDMLVMDRME------EATALIAAA-AHDVDHPGRS 826
            ||.. ||||..|..:|.|      |..|   :|:..|::      ||.|::||| .||:||.|.:
  Rat   556 YRPV-TYHNWRHGFNVGQ------TMFT---LLMTGRLKKYYTDLEAFAMLAAAFCHDIDHRGTN 610

  Fly   827 SAFLCNSNDALAVLYNDLTVLENHHAAITFKLTLGDDKINIFKNLDKETYKSARSTIIDM----I 887
            :.:...|...||.|:. .::||.||...: |..|.|:.:|||:||.|..::    |:|.:    |
  Rat   611 NLYQMKSTSPLARLHG-TSILERHHLEYS-KTLLQDESLNIFQNLSKRQFE----TVIHLFEVAI 669

  Fly   888 LATEMTRHFEHLAKFVSVFGGEEPRDHNPQTDEET-----------SILMRRMLIKVADVSNPAR 941
            :||::..:|:....|..:....|    ..|::|||           .::| .|::...|:|...:
  Rat   670 IATDLALYFKKRTMFQKIVDTCE----QMQSEEETIKYVTADPTKKEVIM-AMMMTACDLSAITK 729

  Fly   942 PMQFCIEWARRIAEEYFMQTDEEKQ--RHLPIVMPMFDR-ATCSIPKSQIGFIEYIIQDMMHAWE 1003
            |.:...:....:|.|::.|.|.|:.  :..||  ||.|| ....:||.|:|||:::...:...:.
  Rat   730 PWEVQSQATLLVANEFWEQGDLERTVLQQQPI--PMMDRNKKGELPKLQVGFIDFVCTFVYKEFS 792

  Fly  1004 SFI-DMPQLITYMQINYSQWKKYDEQ---GVNTLAEIMAKQPPV---GKMA 1047
            .|. ::..::|.:|.|..:||...|:   .|....|.:.||..|   ||.|
  Rat   793 RFHGEITPMLTGLQNNRVEWKSLAEEYEAKVKVTEEEVGKQEEVTSDGKAA 843

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde8NP_001163275.2 PAS 459..539 CDD:238075 19/86 (22%)
PAS_9 463..539 CDD:290162 18/82 (22%)
PDEase_I 775..1016 CDD:278654 74/266 (28%)
Pde6cNP_001101992.1 GAF 81..232 CDD:214500 38/200 (19%)
GAF 256..443 CDD:214500 36/207 (17%)
PDEase_I 561..806 CDD:278654 74/266 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166347754
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.850

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