DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pde8 and pde3a

DIOPT Version :9

Sequence 1:NP_001163275.2 Gene:Pde8 / 37741 FlyBaseID:FBgn0266377 Length:1050 Species:Drosophila melanogaster
Sequence 2:XP_031753954.1 Gene:pde3a / 101730602 XenbaseID:XB-GENE-6033578 Length:1022 Species:Xenopus tropicalis


Alignment Length:592 Identity:161/592 - (27%)
Similarity:233/592 - (39%) Gaps:173/592 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   522 VRRKSQEGIPMHVRVVPVACIGSAPTHLIFNFDVPGGQMDFIATLPQPKEAPRGSLHSVRRCSFD 586
            |..|.::|||.::..:...|  .:|        :||..    |..|..|..|      |:.|   
 Frog   383 VTPKWRQGIPPNISPLISPC--QSP--------IPGTP----AASPTVKSLP------VQFC--- 424

  Fly   587 VRSIASDGLRRTSLAKLTSLPLEAPITKIINLLSQVQE-------------NCSADEARLIDKVL 638
                  ||   |.|.:|...|     .|:::......|             :|...         
 Frog   425 ------DG---TELGRLGPNP-----HKVLSSTKSAPEIPEPFPGSTLVCASCGRS--------- 466

  Fly   639 EFLKREGLYSP-------------QMKEIRTDDPIATDLIGALLTGPSVYSSRRSSNDS----II 686
                    |||             ...:.|||||..|         .|.|.|...:|.|    |:
 Frog   467 --------YSPVNPSDGALDPGEVPHSQNRTDDPTHT---------TSDYDSTHETNHSDSSDIL 514

  Fly   687 ---------------RTGSSTRTAAIVP-------AKMKSNPIIMELLD----ESLSWDFDIFKL 725
                           ::.:|.:...:.|       |.:...|::||.||    |..:|:|.||.|
 Frog   515 PSDEPDGAKDPAQSRKSSASFQGEVLHPLIHSEEKAVLAPEPLLMEDLDSLMGEINNWNFPIFDL 579

  Fly   726 EEITDYHPLLYLGMEMFRRFD---VFATLNIDENVCKAWLAVIEAHYRKSNTYHNSTHAADVMQA 787
            .|.|.......|....:|.|:   :..|..|.......:...:|:.|| ...|||..||.||:.|
 Frog   580 VEKTGQKTGRILSQVSYRLFEDMGLLETFKIPLREFMNYFHALESGYR-DIPYHNRIHATDVLHA 643

  Fly   788 TGAFITQ-----------------------LTNKDM-LVMDRME-----------------EATA 811
            .....||                       :|:..| .|..:|.                 |..|
 Frog   644 VWYLSTQAIPGLPNAVSEQGSASDSDSDSGITHGHMGYVFSKMYNPSDDTYGCLSGNIPSLELMA 708

  Fly   812 L-IAAAAHDVDHPGRSSAFLCNSNDALAVLYNDLTVLENHHAAITFKLTLGDDKINIFKNLDKET 875
            | :|||.||.|||||::|||..:|...||||||.:||||||||..:.|.|...:.|...|||...
 Frog   709 LYVAAAMHDYDHPGRTNAFLVATNAPQAVLYNDRSVLENHHAAAAWNLFLSRPEYNFLVNLDHME 773

  Fly   876 YKSARSTIIDMILATEMTRHFEHLAKFVSVFGGEEPRDHNPQTD---EETSILMRRMLIKVADVS 937
            :|..|..:|:.||||::.:||:.||:|.:...||.    :|..|   |...:|:.:|.||:||::
 Frog   774 FKRFRFLVIEAILATDLKKHFDFLAEFNAKVNGEV----SPGIDWSNENDRLLVCQMCIKLADIN 834

  Fly   938 NPARPMQFCIEWARRIAEEYFMQTDEEKQRHLPIVMPMFDRATCSIPKSQIGFIEYIIQDMMHAW 1002
            .||:.....::|...|..|::.|.|||....||| .|..||:...:.|.|..||.:|:..:.|::
 Frog   835 GPAKFKDLHLKWTEGIVNEFYEQGDEESSLGLPI-SPFMDRSAPQLAKLQESFITHIVGPLCHSY 898

  Fly  1003 ESFIDMP 1009
            :|...||
 Frog   899 DSAGLMP 905

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde8NP_001163275.2 PAS 459..539 CDD:238075 5/16 (31%)
PAS_9 463..539 CDD:290162 5/16 (31%)
PDEase_I 775..1016 CDD:278654 98/280 (35%)
pde3aXP_031753954.1 PRK07764 <19..209 CDD:236090
PDEase_I 631..894 CDD:395177 94/267 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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