DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pde8 and pde1c

DIOPT Version :10

Sequence 1:NP_001163275.2 Gene:Pde8 / 37741 FlyBaseID:FBgn0266377 Length:1050 Species:Drosophila melanogaster
Sequence 2:XP_031759760.1 Gene:pde1c / 100495383 XenbaseID:XB-GENE-994226 Length:762 Species:Xenopus tropicalis


Alignment Length:474 Identity:128/474 - (27%)
Similarity:220/474 - (46%) Gaps:62/474 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   549 LIFNFDVPGGQMDFIATLPQ-PKEAPRGSLHSVRRCSFDVRSIASDGLRRTSLAKLTSL--PLEA 610
            :|...::...|...|||.|: |:|.....|..|.         :.|.:.:.|: :|..|  .||.
 Frog    57 IISGLNLKEKQKPAIATDPRSPEEILADELPQVD---------SPDAIPKASI-RLRCLVKQLER 111

  Fly   611 PITKIINLLSQVQENCSADEARLIDKVLEFLKREGLYSPQMKEIRTDD--PIATDLIGALLTGPS 673
            ....:::|...::...:..|:..||:....|..|    .::.:|::|.  ....|.:.:..|   
 Frog   112 GEASVVDLKKNLEYAATVLESVYIDETRRLLDTE----DELSDIQSDSVPSEVRDWLASTFT--- 169

  Fly   674 VYSSRRSSNDSIIRTGSSTRTAAIVPA-----------KMKSN-------PIIMELLDESLSWDF 720
                 |.....:.||....|..:||.|           :..||       |.::.:|.....|.|
 Frog   170 -----RQMGMMLKRTEEKPRFRSIVHAVQAGIFVERMYRRTSNMVGLSYPPAVIAVLKNVDKWSF 229

  Fly   721 DIFKLEEITDYHPLLYLGMEMFRRFDVFATLNIDENVCKAWLAVIEAHYRK-SNTYHNSTHAADV 784
            |:|.|.:.:..|.|.::..|:..|:|:.....|..:...:::..:|..|.| .|.|||..|||||
 Frog   230 DVFALNDASGDHGLKFIFYELLTRYDLINRFKIPISALVSFVEALEVGYTKHKNPYHNLIHAADV 294

  Fly   785 MQATGAFITQLTNKDMLV--MDRMEEATALIAAAAHDVDHPGRSSAFLCNSNDALAVLYNDLTVL 847
            .|....|:.    |..||  :..:|....:.|||.||.:|.|.::.|...:....|:||||.:||
 Frog   295 TQTVHYFLF----KSGLVHWLTELEIFAMIFAAAVHDYEHTGTTNNFHIQTRSDSAILYNDRSVL 355

  Fly   848 ENHHAAITFKLTLGDDKINIFKNLDKETYKSARSTIIDMILATEMTRHFEHLAKFVSVFGGEEPR 912
            ||||.:..::|...|:::||..||.|:.::..|:.:|:|:|||:|:.||..:.:..:..      
 Frog   356 ENHHVSAAYRLLQDDEEMNILYNLSKDDWREFRALVIEMVLATDMSCHFHQIKQMKNAL------ 414

  Fly   913 DHNPQTDEETSILMRRMLIKVADVSNPARPMQFCIEWARRIAEEYFMQTDEEKQRHLPIVMPMFD 977
             ..|:..::...|  .:|:..||:|:||:.......|...:.||:|.|.|:|.:..||. .|:.|
 Frog   415 -QQPEGIDKPKAL--SLLLHTADISHPAKNWDLHHRWTMSLLEEFFRQGDKEAELGLPF-SPLCD 475

  Fly   978 RATCSIPKSQIGFIEYIIQ 996
            |.:..:.:||||||::|::
 Frog   476 RNSTMVAQSQIGFIDFIVE 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde8NP_001163275.2 NtrB 446..>539 CDD:443061
PDEase_I 775..1016 CDD:459723 76/224 (34%)
pde1cXP_031759760.1 PDEase_I_N 140..200 CDD:462497 13/71 (18%)
PDEase_I 285..507 CDD:459723 76/224 (34%)
Blue background indicates that the domain is not in the aligned region.

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