DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pde8 and pde4c

DIOPT Version :10

Sequence 1:NP_001163275.2 Gene:Pde8 / 37741 FlyBaseID:FBgn0266377 Length:1050 Species:Drosophila melanogaster
Sequence 2:XP_004911040.1 Gene:pde4c / 100380081 XenbaseID:XB-GENE-1002336 Length:801 Species:Xenopus tropicalis


Alignment Length:617 Identity:169/617 - (27%)
Similarity:266/617 - (43%) Gaps:152/617 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   552 NFDVPGGQMDFIATLPQPKEAPRGS--------LHSVRRCSFDVR----------------SIAS 592
            :|||..|...  ...|...:|..||        .||.||.||..|                ||||
 Frog    85 SFDVENGLSS--GRSPLESQASPGSGLVLQGNFPHSQRRESFLYRSDSDYDLSPKAMSRNSSIAS 147

  Fly   593 D----------------GLR--RTSLAKLTSLP---------------------LEAPITKI--- 615
            |                .||  |::.|.||.|.                     .|..:.|:   
 Frog   148 DLHGEDMIVTPFAQVLASLRTVRSNFAMLTHLQDRVSNKRSSGSNQPSACKPNLSEDAVQKLAIE 212

  Fly   616 --------INLLSQVQENCSADE------ARLIDKVLEFL---KREG---------LYSPQMKEI 654
                    ::.|..:|...|..|      .|::::.|..|   .|.|         .:..:..|:
 Frog   213 TLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSETSRSGNQVSEYISSTFLDKQHEV 277

  Fly   655 RTDDPIA----------TDLIGA-LLTGPSVYSSRRSSNDSIIRTGSSTRTAAIVPAKMKSNPII 708
            ....|::          :.:.|. .||..|.:     ||.||.|.|..|.         :..|:.
 Frog   278 EIPTPVSKEKDKKKRPMSQISGVKKLTHSSSF-----SNCSIPRFGVKTE---------QEVPLA 328

  Fly   709 MELLDESLS-WDFDIFKLEEITDYHPLLYLGMEMFRRFDVFATLNIDENVCKAWLAVIEAHYRKS 772
            .|:  |::: |..||||:.|.:...||..:...:|:..|:..|.:|..:....::..:|.||...
 Frog   329 KEV--ENINKWGLDIFKVAEYSGNRPLTVIMYSIFQERDLLKTFHIPVDTFITYMMTLEDHYHSD 391

  Fly   773 NTYHNSTHAADVMQATGAFITQLTNKDMLVMDRMEEATALIAAAAHDVDHPGRSSAFLCNSNDAL 837
            ..|||:.|||||.|:|...::  |.....|...:|...|:.|:|.|||||||.|:.||.|:|..|
 Frog   392 VAYHNNIHAADVAQSTHVLLS--TPALEAVFTDLEIMAAIFASAIHDVDHPGVSNQFLINTNSEL 454

  Fly   838 AVLYNDLTVLENHHAAITFKLTLGDDKINIFKNLDKETYKSARSTIIDMILATEMTRHFEHLAKF 902
            |::|||.:||||||.|:.||| |.::..:||:||.|:..::.|..:|||:|||:|::|...||..
 Frog   455 ALMYNDASVLENHHLAVGFKL-LQEENCDIFQNLTKKQRQTLRKMVIDMVLATDMSKHMNLLADL 518

  Fly   903 VSVFGGEEPRDHNPQTDEETS------------ILMRRMLIKVADVSNPARPMQFCIEWARRIAE 955
            .::.          :|.:.||            |.:.:.::..||:|||.:|::...:|..||..
 Frog   519 KTMV----------ETKKVTSLGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLEIYRQWTDRIIV 573

  Fly   956 EYFMQTDEEKQRHLPIVMPMFDRATCSIPKSQIGFIEYIIQDMMHAWESFI--DMPQLITYMQIN 1018
            |:|.|.|.|:::.:.| .||.|:...|:.|||:|||:||:..:...|...:  |..:::..::.|
 Frog   574 EFFHQGDREREKGMEI-SPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQEILDTLEDN 637

  Fly  1019 YSQWKKYDEQGVNTLAEIMAKQPPVGKMANSK 1050
            ...::....|..:...|  .:.|..|..|..|
 Frog   638 REWYQSMIPQSPSPPPE--EQDPDRGNAAGDK 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde8NP_001163275.2 NtrB 446..>539 CDD:443061
PDEase_I 775..1016 CDD:459723 93/254 (37%)
pde4cXP_004911040.1 PDE4_UCR 156..272 CDD:465648 18/115 (16%)
PDEase_I 394..634 CDD:459723 93/253 (37%)
Blue background indicates that the domain is not in the aligned region.

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