DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde8 and pde11a

DIOPT Version :9

Sequence 1:NP_001163275.2 Gene:Pde8 / 37741 FlyBaseID:FBgn0266377 Length:1050 Species:Drosophila melanogaster
Sequence 2:XP_002934646.1 Gene:pde11a / 100379882 XenbaseID:XB-GENE-5999893 Length:892 Species:Xenopus tropicalis


Alignment Length:1016 Identity:215/1016 - (21%)
Similarity:348/1016 - (34%) Gaps:318/1016 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 RNS-SKTPEEMELEYEANVEAESRDIMTPLRRNTRPLSVSFGGGGGRSALQPEIVEAI---RSLD 204
            ||. :|||.      .::.:.:|:|..:           :.|.|..|.|.|.|:.::.   ::::
 Frog    41 RNQLAKTPS------SSSADDKSKDCWS-----------NRGDGLQRRASQKELRKSFARSKAIN 88

  Fly   205 VPALRLNNLSFDGSTDPKGERNHAEEEPLTPGHDHEDSVVLRRKVNCLERKAHSLYERRLPRVPK 269
            |      |.::|...      |...:||||.         :||:  .|.|||.||          
 Frog    89 V------NRTYDEHV------NSRAQEPLTS---------MRRR--ALLRKASSL---------- 120

  Fly   270 LHLLVAGKKNPPTEEEEFRTFQRNLMDLKYPTVLPPNPPLKAL-LVFHKSDSICEAITAACQRHQ 333
                      |||..........:.:::       |..|..|: .:::..:.         ....
 Frog   121 ----------PPTTAHILSALLESRVNI-------PQYPSTAIDYIYYLKEH---------NERA 159

  Fly   334 LDVTLVKSKEEALDTLQKSYATAQCYHLII-----IDARSSKNLDAEHIARTIRHTHGHHLTTII 393
            ..:.|||.....|:      .|:.||.::|     :||........|..|.              
 Frog   160 FFLELVKDISNELN------LTSLCYKILIFVCIMVDADRCSLFLVEGTAN-------------- 204

  Fly   394 AVCKKS----FFEKDDVLIALLDAGVNRCVAETTNLAMCSVELKQILH-----SIIRPHNVMSTQ 449
               |||    ||:        :.||       ||.|..||.|....:.     .||.        
 Frog   205 ---KKSLVSKFFD--------VHAG-------TTLLPSCSTENSNEVQVPWGKGIIG-------- 243

  Fly   450 QALYTALHRLKEVVLITDDLLRIQYANRATERLLNMRLDEIISKQLEDIFVSDLSTISEQCKNIK 514
               |.|.|  .|.|.|.|     .|.:|        |..:.|.|      ::...|.|..|..|:
 Frog   244 ---YVAEH--GETVNIPD-----AYQDR--------RFSDEIDK------LTGYKTKSLLCMPIR 284

  Fly   515 EFDGILTVRRKSQEGIPMHVRVVPVACIGSAP----------THLIF-NFDVPGGQMDFIATLPQ 568
            ..||.:.       |:...:...|    |.||          .:|.| ...:...|: |.|:   
 Frog   285 SSDGEII-------GVAQAINKTP----GGAPFIEDDEKVMQMYLPFCGIAISNAQL-FAAS--- 334

  Fly   569 PKEAPRG-SLHSVRRCSFD--------VRSI---ASDGLRRTSLAKLTSLPLEAPITKIINLLSQ 621
            .||..|. :|..|....|:        |:.|   |.:.|:....:.|....:|:|:.|.......
 Frog   335 RKEYDRSRALLEVVNDLFEEQTDLEKVVKKIMHRAQNLLKCERCSVLLLEDIESPVVKFTKSFEL 399

  Fly   622 VQENCSADEARLIDKVLEFLKREGLYSPQMKEIRTDDPIATDLIGALL--TGPSV-----YSSRR 679
            :...||||             .|..:...:::....|.:..:.|..|:  ||..|     |...|
 Frog   400 LSPKCSAD-------------TENSFKDSVEKSSYSDWLVNNSIAELVASTGLPVNISDAYQDPR 451

  Fly   680 SSNDSIIRTGSSTRTAAIVPAKMKSNPII-------------MELLDESL--------------- 716
            ...::...:|...|:...||....|:.||             .:..|:.|               
 Frog   452 FDVEADQFSGFHIRSVLCVPIWNSSHQIIGVAQVLNRIDGKPFDDADQRLFEAFVIFCGLGINNT 516

  Fly   717 --------SW-------------------DFDIFKLE--------EITDYH---------PLLYL 737
                    ||                   :.|.||..        .|.|.|         .::..
 Frog   517 IMYDQVKKSWAKQSVALDVLSYHATCSKAEVDKFKAANIPLVSELSIADIHFDDFCLDVDAMISA 581

  Fly   738 GMEMFRRFDVFATLNID-ENVCKAWLAVIEAHYRKSNTYHNSTHAADVMQATGAFITQLTNKDML 801
            .:.||....:.....|| |.:|: ||..|..:||.. .|||..||.:|.|...|.:|....::  
 Frog   582 ALRMFMELGMVQKFKIDYETLCR-WLLTIRKNYRMV-LYHNWRHAFNVCQLMFAMLTTAGFQE-- 642

  Fly   802 VMDRMEEATALIAAAAHDVDHPGRSSAFLCNSNDALAVLYNDLTVLENHH--AAITFKLTLGDDK 864
            |:...|....::....||:||.|.::||...|..||:.||.....||:||  .|:   :.|..:.
 Frog   643 VLSDTETLALIVGCLCHDLDHRGTNNAFQAKSGSALSQLYGTSATLEHHHFNHAV---MILQSEG 704

  Fly   865 INIFKNLDKETYKSARSTIIDMILATEMTRHFEHLAKFVSVFGGEEPRDHNPQTDEETSILMRRM 929
            .|||.||..:.|......:...||||::|.|||...:|..:.   ...|:|... :...::.|.|
 Frog   705 HNIFANLSSQEYSDLMQLLKQSILATDITLHFERRNEFFELV---NKGDYNWNV-KSHRVIFRSM 765

  Fly   930 LIKVADVSNPARPMQFCIEWARRIAEEYFMQTDEEKQRHLPIVMPMFDR-ATCSIPKSQIGFIEY 993
            |:...|:....:|.:...:.|..:..|:|.|.|.|:.........:||| ....:|:.|:.:|:.
 Frog   766 LMTACDLGAATKPWEISRQVAELVTSEFFEQGDRERLELKMTPSAIFDRNRKDELPRLQLEWIDN 830

  Fly   994 IIQDMMHAWESFI----DMPQLITYMQINYSQWKK-YDEQG 1029
            |...:   :||.:    .:..::..:..|..:|:: :.:||
 Frog   831 ICFPL---YESLVKINGKLKPMLDSVTTNRGKWEELHRKQG 868

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde8NP_001163275.2 PAS 459..539 CDD:238075 16/79 (20%)
PAS_9 463..539 CDD:290162 15/75 (20%)
PDEase_I 775..1016 CDD:278654 66/247 (27%)
pde11aXP_002934646.1 GAF 173..335 CDD:214500 51/246 (21%)
GAF 357..523 CDD:214500 30/178 (17%)
PDEase_I 618..853 CDD:365964 66/246 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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