DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde8 and pde1b

DIOPT Version :9

Sequence 1:NP_001163275.2 Gene:Pde8 / 37741 FlyBaseID:FBgn0266377 Length:1050 Species:Drosophila melanogaster
Sequence 2:XP_017946519.1 Gene:pde1b / 100036722 XenbaseID:XB-GENE-987197 Length:554 Species:Xenopus tropicalis


Alignment Length:587 Identity:145/587 - (24%)
Similarity:244/587 - (41%) Gaps:114/587 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   520 LTVRRKSQEGIPMHVRVVPVACIGSAPTHLIFNFDVPGGQMDFIATLPQPKEAPRGSLHSVRRCS 584
            |:..|:.|.|.|:             |.|                  |...|:|......:..|:
 Frog     3 LSTTRRLQRGTPL-------------PLH------------------PGMMESPSVDKDLLEGCT 36

  Fly   585 --FDVRSIASDGL--RRTSLAKLTSLPLEAPITKIINLLSQVQENCSADEARLIDKVLEFLKREG 645
              |:::|..|..:  :..||.|.....||.....|:.|...::...|..||..||:..:.|..: 
 Frog    37 SPFELKSAPSKKMWVKLRSLLKYMVKQLENGEVNIVELKKNLEYTASLLEAVYIDETRQILDTD- 100

  Fly   646 LYSPQMKEIRTDD--PIATDLIGALLTGPSVYSSRRSSNDSIIRTGSSTRTAAIVPAKM------ 702
               .::.|:|:|.  ....|.:.:..|..:..:.|||......|:......|.|...:|      
 Frog   101 ---DELPEMRSDSVPSEVRDWLASTFTQQTRSTGRRSEEKPRFRSIVHAVQAGIFVERMFRRSYT 162

  Fly   703 -----KSNPIIMELLDESLSWDFDIFKLEEITDYHPLLYLGMEMFRRFDVFATLNIDENVCKAWL 762
                 .|..::..|....| ||||:|.|..:::.|.|..:..|:..|.::.:...|......::|
 Frog   163 AVGPNYSAAVVNSLKHLDL-WDFDVFVLNRVSEDHALKTIVFELLSRHNLNSRFKIPVAFLMSFL 226

  Fly   763 AVIEAHYRK-SNTYHNSTHAADVMQATGAFITQLTNKDMLVMDRMEEATALIAAAAHDVDHPGRS 826
            ..:|:.|.| .|.|||..|||||.|....|:  |....:..::.:|....:.|||.||.:|.|.:
 Frog   227 DSLESGYGKYKNPYHNQIHAADVTQTVHCFL--LRTGMVHCLNEIEILAIIFAAAIHDFEHTGTT 289

  Fly   827 SAFLCNSNDALAVLYNDLTVLENHHAAITFKLTLGDDKINIFKNLDKETYKSARSTIIDMILATE 891
            ::|...:....|:||||.:||||||.:..::: :.||::|||.||.|:.:...||.:|:|:|||:
 Frog   290 NSFHIQTKSDCAILYNDRSVLENHHVSAVYRI-MQDDEMNIFVNLTKDEFTELRSLVIEMVLATD 353

  Fly   892 MTRHFEHLAKFVSVFGGEEPRDHNPQTDEETSILMRRMLIKVADVSNPARPMQFCIEWARRIAEE 956
            |:.||:.:....:..       ...:|.:::..|  .:|:..||:|:|.:..:....|.:.:.||
 Frog   354 MSCHFQQVKTMKTSL-------QQLETIDKSKAL--SLLLHAADISHPTKQWKVHARWTKALMEE 409

  Fly   957 YFMQTDEEKQRHLPIVMPMFDRATCSIPKSQIGFIEYI--------------------------- 994
            :|.|.|:|.:..||. .|:.||.:..:.:|||||||:|                           
 Frog   410 FFRQGDKEAEMGLPF-SPLCDRKSTLVAQSQIGFIEFIVDPTFSVLTDVAEKTVLPLVEERSKSK 473

  Fly   995 ----------------IQDMMHAWESFIDMPQLIT----YMQINYSQWKKYDEQGVNTLAEIMAK 1039
                            |.|.....:...|:....|    |:|.|..:||:....|:.....:...
 Frog   474 STASVNQSSSQWRQPSIDDHSEMGDINADIKSFRTTWTKYIQENKQKWKERAASGITNQTSVDEL 538

  Fly  1040 QP 1041
            .|
 Frog   539 SP 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde8NP_001163275.2 PAS 459..539 CDD:238075 5/18 (28%)
PAS_9 463..539 CDD:290162 5/18 (28%)
PDEase_I 775..1016 CDD:278654 81/287 (28%)
pde1bXP_017946519.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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