DRSC/TRiP Functional Genomics Resources

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Protein Alignment ItgaPS5 and Itga10

DIOPT Version :9

Sequence 1:NP_611808.2 Gene:ItgaPS5 / 37732 FlyBaseID:FBgn0034880 Length:1018 Species:Drosophila melanogaster
Sequence 2:NP_001101169.2 Gene:Itga10 / 310683 RGDID:1305152 Length:1167 Species:Rattus norvegicus


Alignment Length:1137 Identity:249/1137 - (21%)
Similarity:429/1137 - (37%) Gaps:302/1137 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MHRLLFLIFL--------ALKYQSNAMNFSPL-----PNRVIDAPKHLKTRMIQVRSSYFGYSLV 52
            :.||:..:|:        .::|..|.::...|     ...|:.|.::|..|  :.|.:....:::
  Rat   188 LRRLVGRLFIDPEQIQVGLVQYGENPVHEWSLGDFRTKEEVVRAARNLSRR--EGRETRTAQAIM 250

  Fly    53 IRPTSIFV----GAPRAQSTL------ESQGSINETGAVYRCPLASGSCSHY---VLNDKLNKQF 104
            :..|..|.    |.|.|...|      ||........|:..|  .:|..:.|   ||...|.:| 
  Rat   251 VACTEGFSESRGGRPEAARLLVVVTDGESHDGEELPAALKAC--EAGRVTRYGIAVLGHYLRRQ- 312

  Fly   105 QWLGGSMDGGTKDTDKLL------VCAP--RFFVPKNKNYGQMRGICYWVRDTVADTPPLSDV-- 159
                       :|....|      ...|  |||.                  .|.|...|:|:  
  Rat   313 -----------RDPSSFLREIRAIASDPDERFFF------------------NVTDEAALTDIVD 348

  Fly   160 ----RTISLIPSQAEEHF-----MLELGLSAHVTDDNSGFLIGAPGVRSWKGSVL-VHRGEDL-- 212
                |...|..|:.|...     |.|:|.|.|...|  |.|.|..|...|.|||| :..|..|  
  Rat   349 ALGDRIFGLEGSRGENESSFGLEMSEIGFSIHRLQD--GILFGMVGAYDWGGSVLWLEEGRRLFP 411

  Fly   213 ---AAQGSYAVKMLDSWDWVKNHFTYVGYALSSGYFSSNNRTSLLYVTTAPSSVLNTGKAYIFDV 274
               |.:..:...:       :||..|:||::||.......|   |:::.|| ...:.||...|.:
  Rat   412 PRTALEDEFPPAL-------QNHAAYLGYSVSSMLLPGGRR---LFLSGAP-RFRHRGKVIAFQL 465

  Fly   275 VGE-IVRKLHVFHGEQLGEYFGYSVVAEDLNGDGLTDV-VVSAPLNALGDSYDVGAIYVFI--NK 335
            ..: :|:......|:|:|.|||..:...|.:.||:|:: :|:||:.....:.:.|.|||::  .:
  Rat   466 KKDGVVKVTQSLQGDQIGSYFGSELCPLDTDMDGITNILLVAAPMFLGPQNKETGRIYVYVVGQQ 530

  Fly   336 GLFKFEKKIIRLPLSSGARFGSSLSKVGDINHDGYNDLAVGAPF--AGNGAVFIFLGSEHGLRDE 398
            .|...: ..::...|..:|||.:::.:.|:||||::|:|||||.  ...||::::.|::.|:|..
  Rat   531 NLLMLQ-GTLQPDRSQDSRFGFAMAALPDLNHDGFSDVAVGAPLEDGHQGALYLYHGTQTGIRPH 594

  Fly   399 PSQRLDAPSREPGPYGAHMFGQGLSRGSDIDGNGFNDLAIGAPGAEAVYLYRAYPVVKIHAT--- 460
            |:||:.|.|.   |.....||:.:....|:||:...|:|:||.|  |..|:.:.|::.:..|   
  Rat   595 PTQRIAAGSM---PQALRYFGRSVDGRLDLDGDDLVDVAVGAHG--AAILFSSQPIIHLIPTLDV 654

  Fly   461 -------VRSESRAIRPEQETITVTACYRLETTSKARQMQQQELTFRMTIDELLQRVSFAPMRTN 518
                   |:.:.:....|...:|.:.|:::::.:..|..::..:.|..::||.            
  Rat   655 MPPHISVVQKDCKRRGQEAACLTASLCFQVKSQTPGRWDRRFHIRFSASLDEW------------ 707

  Fly   519 EVSFQAQAGLSGSCRNFSVG-------------VHY----TGGIFTPIDLELHYEL---AKKIPH 563
              :..|:|...||.:..|.|             :|:    |.....|:.|.:.:.|   .|..|.
  Rat   708 --TAGARAAFDGSGQRLSPGQLRLSVGNVTCEQLHFHALDTSDYLRPVALTVTFALDNTTKPGPV 770

  Fly   564 SHEAFCESCAVVDPLEPKYATGTLSFMTGCAA-HVCVSDLQL-SSKDVNSS-----FIFGSLEVL 621
            ..|....|...:.|           |...|.. :.|::||.| :..|:..|     .:.|..:.:
  Rat   771 LAEGSSTSIRKLIP-----------FSKDCGPDNECITDLVLQADMDIRGSRKSPFVVQGGRQKV 824

  Fly   622 SFSYEITNSGEPAYVAQFNVTSSARLPFA--------KVPGNCRV-RHEVMLCDLNGGRALARGD 677
            ..|..:.|..|.||....:::.|..|..|        .|...|.| .....|| :.|......|.
  Rat   825 LVSVTLENKKENAYNTSLSLSFSRNLHLASLTPQRAKSVKVECAVPSPHARLC-IVGHPVFQAGA 888

  Fly   678 SESLTIIFDVT---QLSGQSLTIEAAVSSAGMDQNPKDNTMSTTISLREYAEIDASGGPIDGHIA 739
            ..|..:.|:.:   .||..|:.:.|:.||...::..:|||..|:..:|           .:.|:.
  Rat   889 KVSFLLEFEFSCTFLLSQVSVRLTASSSSLERNETLQDNTAQTSAYIR-----------YEPHLM 942

  Fly   740 LKE---------YPYSA-EVNNSYEFKSH------GPSIIDELTVYVDVP-----------IAYT 777
            ...         :||.| .|....|||:.      |..::..|.|...:|           ::..
  Rat   943 FSSESTLHRYEVHPYRALPVGPGPEFKTTLRVQNLGCHVVSGLVVSALLPAVAHGGNYFLSLSQV 1007

  Fly   778 VTGSAGIKSIFNISSLQMQATHGSELVPIKLYDQTNTLAKEYPLEDSSRRANRKRRELQQDQYAI 842
            ::|:|.. ::.|::.......|..|                  |:.:||                
  Rat  1008 ISGNASC-TVQNLTDPPGFPVHPEE------------------LQHTSR---------------- 1037

  Fly   843 MPDVNISDILTKENLPANRTLVLDCLRGNWTICVRSQMRVQLKPEQPIDLRIS---FKVDLNDFV 904
                                     |.|:.|.|...:..:.|.|:   ...||   .::..|:|.
  Rat  1038 -------------------------LNGSNTRCQAVRCHLGLLPK---GTEISVGLLRLVHNEFF 1074

  Fly   905 NTFDYLVIFTNVEMFKEGDSTSIALKRNLKPNVIFNYSE------TPLPIWYIILSLIAGHLLLG 963
            ....:..: |.|..||.|......|..|.......::.|      |.:.:|.::.|::.|.|||.
  Rat  1075 RRAKFKSV-TVVSTFKLGTEKGSVLLLNEASQWRESHLEVIQTLPTLISLWILVGSVLGGLLLLA 1138

  Fly   964 AMTYILYKLRFFKRGKKEELKRLLEEHRSETK 995
            .:.:.|:||.||.|      |::.:|.:||.|
  Rat  1139 LLVFCLWKLGFFTR------KKIPKEEQSEGK 1164

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS5NP_611808.2 VCBS 302..375 CDD:338792 22/75 (29%)
Int_alpha 351..403 CDD:214549 21/53 (40%)
Int_alpha 417..463 CDD:214549 15/55 (27%)
Integrin_alpha2 451..836 CDD:337057 83/460 (18%)
Itga10NP_001101169.2 Int_alpha 41..81 CDD:214549
vWA_integrins_alpha_subunit 166..346 CDD:238746 36/191 (19%)
Int_alpha 482..>525 CDD:214549 14/42 (33%)
Int_alpha 545..599 CDD:214549 21/53 (40%)
Integrin_alpha2 642..1050 CDD:285619 87/504 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335699
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.940

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