DRSC/TRiP Functional Genomics Resources

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Protein Alignment ItgaPS5 and Gpld1

DIOPT Version :10

Sequence 1:NP_611808.2 Gene:ItgaPS5 / 37732 FlyBaseID:FBgn0034880 Length:1018 Species:Drosophila melanogaster
Sequence 2:NP_001093982.1 Gene:Gpld1 / 291132 RGDID:631371 Length:843 Species:Rattus norvegicus


Alignment Length:560 Identity:122/560 - (21%)
Similarity:196/560 - (35%) Gaps:161/560 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 VLNDKLNKQFQWLGGSMDGGTKDTDKLLVCAPRFFVPKNKNY--GQMRGICYWVRDTVADTPPLS 157
            |:.|....||..:.|.|...:|........:| |.|.:.::|  |.:..:.:|..:....|    
  Rat   206 VIVDCTYLQFLEMHGEMLAVSKLYSTYSTKSP-FLVEQFQDYFLGGLDDMAFWSTNIYRLT---- 265

  Fly   158 DVRTISLIPSQAEEHFMLELGLSAHVTDDNSGFLIGAPGVRS------------WKGSVLVHRGE 210
                          .||||.|.|.....:|..| |...|.::            :..::.:...:
  Rat   266 --------------SFMLENGTSDCNLPENPLF-ISCDGRKNHTLSSSKVQKNDFHRNLTMFISK 315

  Fly   211 DLAAQGSYAVK--MLDSWDWVKNHFTYVGYALSSG---YFSSNNRTSLLYVTTAPSSVLNTGKAY 270
            |:....:|..:  ...:..|.....|::...|...   .|:.|::|:|.:| ::||:.......|
  Rat   316 DIRKNLNYTERGVFYSTGSWAPESVTFMYQTLERNLRMMFTGNSQTALKHV-SSPSASYTLSVPY 379

  Fly   271 IFDVVGEIVRKLHVFHGEQLGEYFGYSVVAEDLNGDGLTDVVVSAPLNALGDSYDVGAIYVF--- 332
                                 ...|:.:.:.|||.||..|:||.||..:....:.:|.:|:.   
  Rat   380 ---------------------ARLGWVMASADLNQDGHGDLVVGAPGYSHPGRFQIGRVYIIYGN 423

  Fly   333 ------INKGLFKFEKKIIRLPLSSGARFGSSLSKVGDINHDGYNDLAVGAPFAG------NGAV 385
                  |:..|.|....::.....|| ||||:|: |.|.|.||..|||||||..|      ||:|
  Rat   424 DLGLPPIDLDLDKEAHGVLEGFQPSG-RFGSALA-VLDFNKDGLPDLAVGAPSVGSGQLTYNGSV 486

  Fly   386 FIFLGSEHG-LRDEPSQRLDAPSREPGPYGAHMFGQGLSRGSDIDGNGFNDLAIGAPGAEAVYLY 449
            :::.||:.| |...|:..:........      .|..| ..:|.||:|.:||.|.:|.|......
  Rat   487 YVYYGSQQGRLSSSPNITISCKDTYCN------LGWAL-LAADADGDGQHDLVISSPFAPGGGKQ 544

  Fly   450 RAYPVVKIHATVRSESRAIRPEQETIT-----------------------VTACYR--------- 482
            |.     |.|...|..|  |.::|::|                       ||...|         
  Rat   545 RG-----IVAAFYSHPR--RNDKESLTLDEADWKVNGEEDFSWFGYSLHGVTVANRSLLLIGSPT 602

  Fly   483 ---LETTSKARQMQQQELTFRMTIDELLQRV--SFAPMRTNEVSFQAQAGLSGSCRNFSVGVHYT 542
               :...:::...:.||       .:.|.||  .|.|.|..|::......:.....:.|.|....
  Rat   603 WKNISRMARSSHQKNQE-------KKSLGRVYGYFPPNRQREITISGDKAMGKLGTSLSSGYVRV 660

  Fly   543 GGIFTPI-----------------DLELH-------YELA 558
            .|..|.:                 .:.||       ||||
  Rat   661 NGTLTQVLLVGAPTHDDVSKMAFLTMTLHQGGATRMYELA 700

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS5NP_611808.2 FG-GAP 294..332 CDD:460357 13/37 (35%)
Int_alpha 351..403 CDD:214549 28/58 (48%)
Int_alpha 417..463 CDD:214549 14/45 (31%)
Integrin_alpha2 453..837 CDD:462478 29/167 (17%)
Gpld1NP_001093982.1 Zn_dep_PLPC 28..220 CDD:425927 4/13 (31%)
FG-GAP 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 368..429 16/81 (20%)
Int_alpha 378..435 CDD:214549 15/77 (19%)
FG-GAP 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 435..498 27/64 (42%)
Int_alpha 447..503 CDD:214549 28/57 (49%)
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 500..560 18/73 (25%)
FG-GAP 515..551 CDD:460357 14/41 (34%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 564..625 7/67 (10%)
FG-GAP 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 635..695 7/59 (12%)
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 707..773
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 791..843
Blue background indicates that the domain is not in the aligned region.

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