DRSC/TRiP Functional Genomics Resources

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Protein Alignment ItgaPS5 and Itga1

DIOPT Version :9

Sequence 1:NP_611808.2 Gene:ItgaPS5 / 37732 FlyBaseID:FBgn0034880 Length:1018 Species:Drosophila melanogaster
Sequence 2:NP_112256.1 Gene:Itga1 / 25118 RGDID:2923 Length:1180 Species:Rattus norvegicus


Alignment Length:1060 Identity:239/1060 - (22%)
Similarity:428/1060 - (40%) Gaps:212/1060 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 KHLKTRMIQVRSSYFGYSLVIRP-TSIFVGAPRAQSTLESQGSINETGAVYRCPLASGSCSHY-- 94
            |:..|..:.|.::..|....::. |::.:...|.::..|::|:......|........|..:|  
  Rat   226 KYSSTEEVLVAANKIGRQGGLQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNYRL 290

  Fly    95 --VLNDKLNKQFQWLG----GSMDGGTKDTDKLLVCAPRFFVPKNKNYGQMRGICYWVRDTVADT 153
              |:.|..::..|...    |..:.|...|:|        ||.:.|              ::|..
  Rat   291 KQVIQDCEDENIQRFSIAILGHYNRGNLSTEK--------FVEEIK--------------SIASE 333

  Fly   154 PP------LSD-VRTISLIPSQAEEHFMLE----------------LGLSAHVTDDNSGFLIGAP 195
            |.      :|| :..::::.:..|..|.||                .|.|||.:.|  ..::||.
  Rat   334 PTEKHFFNVSDELALVTIVKALGERIFALEATADQSAASFEMEMSQTGFSAHYSQD--WVMLGAV 396

  Fly   196 GVRSWKGSVLVHRGEDLAAQGSYA-----VKMLDSWDWVKNHFTYVGYALSSGYFSSNNRTSLLY 255
            |...|.|:|::.:...:....:..     .||.:..      .:|:||.::|.....:    :||
  Rat   397 GAYDWNGTVVMQKANQMVIPHNTTFQTEPAKMNEPL------ASYLGYTVNSATIPGD----VLY 451

  Fly   256 VTTAPSSVLNTGKAYIFDVVGEIVRKLHVFHGEQLGEYFGYSVVAEDLNGDGLTD-VVVSAPLNA 319
            :...| ...:||:..|:.:....:..|....|||:|.|||..:...|::.|..|| ::|.||:..
  Rat   452 IAGQP-RYNHTGQVVIYKMEDGNINILQTLGGEQIGSYFGSVLTTIDIDKDSYTDLLLVGAPMYM 515

  Fly   320 LGDSYDVGAIYVF-INKGLFKFEKKI--IRLPLSS----------------GARFGSSLSKVGDI 365
            ..:..:.|.:||: :|:..|:::..:  ||....|                |||||::::.|.|:
  Rat   516 GTEKEEQGKVYVYAVNQTRFEYQMSLEPIRQTCCSSLKDNSCTKENKNEPCGARFGTAIAAVKDL 580

  Fly   366 NHDGYNDLAVGAPFAGN--GAVFIFLGSEHGLRDEPSQRLDAPSREPGPYGAHMFGQGLSRGSDI 428
            |.||:||:.:|||...:  |||:|:.||...:|:..:||:  ||...|. ....|||.:....|:
  Rat   581 NVDGFNDVVIGAPLEDDHAGAVYIYHGSGKTIREAYAQRI--PSGGDGK-TLKFFGQSIHGEMDL 642

  Fly   429 DGNGFNDLAIGAPGAEAVYLYRAYPVVKIHAT-----VRSESRAIRPE-QETITV--TACYRLET 485
            :|:|..|:.||..|..|::..|...|||:...     |..:.:..|.| :||:.:  |.|:.::.
  Rat   643 NGDGLTDVTIGGLGGAALFWARDVAVVKVTMNFEPNKVNIQKKNCRVEGKETVCINATMCFHVKL 707

  Fly   486 TSKARQMQQQELTFRMTIDELLQ--RVSFAPMRTNEVSFQAQAGLSGSCRN--FSVGVH-YTGGI 545
            .||...:.:.:|.:|:|:|.|.|  |..|:..:..::........|...|:  :.:..| :...:
  Rat   708 KSKEDSIYEADLQYRVTLDSLRQISRSFFSGTQERKIQRNITVRESECIRHSFYMLDKHDFQDSV 772

  Fly   546 FTPIDLELHYELAKKIPHSHEAFCESCAVVDPLEPKYATGTLSFMTGCA-AHVCVSDLQLSSKDV 609
            ...:|..|             ...|:..|:|...|......:.|...|. ...|:|||.|:....
  Rat   773 RVTLDFNL-------------TDPENGPVLDDALPNSVHEHIPFAKDCGNKERCISDLTLNVSTT 824

  Fly   610 NSSFIFGSLEVLSFSYEIT--NSGEPAYVAQFNVTSSARLPFAKVPG------------NCRVRH 660
            ..|.:....:...|:..:|  |.|:.||..:..|..|..|.|:.:..            .|||  
  Rat   825 EKSLLIVKSQHDKFNVSLTVKNKGDSAYNTRTVVQHSPNLIFSGIEEIQKDSCESNQNITCRV-- 887

  Fly   661 EVMLCDLNGGRALARGDSESLTII--FDVTQLSGQSLTIEAAVSSAGMDQNP----KDNTMSTTI 719
                    |...|..|::.:..||  |:.:.||..::...:|.|.:   :.|    .||.::.:|
  Rat   888 --------GYPFLRAGETVTFKIIFQFNTSHLSENAIIHLSATSDS---EEPLESLNDNEVNISI 941

  Fly   720 SLREYAEIDASGGPIDGHIALKEYPYSAEVNNSYEFKSHGPSIIDELTVYVDVPIAYTVTGSAGI 784
            .::....:.......:.||::.......|..||.|      .|.:|:.|:      ||:..    
  Rat   942 PVKYEVGLQFYSSASEHHISVAANETIPEFINSTE------DIGNEINVF------YTIRK---- 990

  Fly   785 KSIFNISSLQMQATHGSELVPIKLYDQTNTLAKEYPL-----EDSSRRANRKRRELQQDQYAI-- 842
            :..|.:..||:..:.            .|..|..||:     ..||...|.:.|.| :|.:.|  
  Rat   991 RGHFPMPELQLSISF------------PNLTADGYPVLYPIGWSSSDNVNCRPRSL-EDPFGINS 1042

  Fly   843 --MPDVNISDILTKENLPANRTLVLDCLRGNWTICVRSQMRVQLKPEQPIDLRISFKVDLNDFVN 905
              ...::.|::|       .|..:.||.    :.|..:.:...|.|.....:.:|..:....|:.
  Rat  1043 GKKMTISKSEVL-------KRGTIQDCS----STCGVATITCSLLPSDLSQVNVSLLLWKPTFIR 1096

  Fly   906 T-FDYLVIFTNVEMFKEGDSTSIALKRNLKPNVIFNYSETPL----PIWYIILSLIAGHLLLGAM 965
            . |..|.:....|:..|..|.::: ..|.|..:....|:..|    |:|.|:||..||.|||..:
  Rat  1097 AHFSSLNLTLRGELKSENSSLTLS-SSNRKRELAIQISKDGLPGRVPLWVILLSAFAGLLLLMLL 1160

  Fly   966 TYILYKLRFFKRGKKEELKR 985
            ...|:|:.||||..|:::::
  Rat  1161 ILALWKIGFFKRPLKKKMEK 1180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS5NP_611808.2 VCBS 302..375 CDD:338792 27/92 (29%)
Int_alpha 351..403 CDD:214549 24/69 (35%)
Int_alpha 417..463 CDD:214549 16/50 (32%)
Integrin_alpha2 451..836 CDD:337057 86/423 (20%)
Itga1NP_112256.1 FG-GAP 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 30..91
FG-GAP 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 101..160
vWA_integrins_alpha_subunit 171..351 CDD:238746 25/146 (17%)
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 365..417 11/53 (21%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 422..474 12/62 (19%)
FG-GAP 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 475..537 20/61 (33%)
Int_alpha 485..>528 CDD:214549 13/42 (31%)
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 556..614 21/57 (37%)
Int_alpha 567..620 CDD:214549 23/52 (44%)
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 618..678 20/62 (32%)
Integrin_alpha2 663..1073 CDD:285619 96/475 (20%)
GFFKR motif 1168..1172 2/3 (67%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335726
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.940

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