DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ItgaPS5 and Itga10

DIOPT Version :9

Sequence 1:NP_611808.2 Gene:ItgaPS5 / 37732 FlyBaseID:FBgn0034880 Length:1018 Species:Drosophila melanogaster
Sequence 2:NP_001289400.1 Gene:Itga10 / 213119 MGIID:2153482 Length:1166 Species:Mus musculus


Alignment Length:1106 Identity:257/1106 - (23%)
Similarity:441/1106 - (39%) Gaps:241/1106 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MHRLLFLIFL--------ALKYQSNAMNFSPL-----PNRVIDAPKHLKTRMIQVRSSYFGYSLV 52
            :.||:..:|:        .::|..|.::...|     ...|:.|.::|..|  :.|.:....:::
Mouse   188 LRRLVGRLFIDPEQIQVGLVQYGENPVHEWSLGDFRTKEEVVRAARNLSRR--EGRETRTAQAIM 250

  Fly    53 IRPTSIFV----GAPRAQSTL------ESQGSINETGAVYRCPLASGSCSHY---VLNDKLNKQF 104
            :..|..|.    |.|.|...|      ||........|:..|  .:|..:.|   ||...|.:| 
Mouse   251 VACTEGFSQSRGGRPEAARLLVVVTDGESHDGEELPAALKAC--EAGRVTRYGIAVLGHYLRRQ- 312

  Fly   105 QWLGGSMDGGTKDTDKLL------VCAP--RFFVPKNKNYGQMRGICYWVRDTVADTPPLSDV-- 159
                       :|....|      ...|  |||.                  .|.|...|:|:  
Mouse   313 -----------RDPSSFLREIRAIASDPDERFFF------------------NVTDEAALTDIVD 348

  Fly   160 ----RTISLIPSQAEEHF-----MLELGLSAHVTDDNSGFLIGAPGVRSWKGSVL-VHRGEDL-- 212
                |...|..|:.|...     |.|:|.|.|...|  |.|.|..|...|.|||| :..|..|  
Mouse   349 ALGDRIFGLEGSRGENESSFGLEMSEIGFSIHRLQD--GILFGMVGAYDWGGSVLWLEEGRRLFP 411

  Fly   213 ---AAQGSYAVKMLDSWDWVKNHFTYVGYALSSGYFSSNNRTSLLYVTTAPSSVLNTGKAYIFDV 274
               |.:..:...:       :||..|:||::||.......|   |:::.|| ...:.||...|.:
Mouse   412 PQAALEDEFPPAL-------QNHAAYLGYSVSSMLLPGGRR---LFLSGAP-RFRHRGKVIAFQL 465

  Fly   275 VGE-IVRKLHVFHGEQLGEYFGYSVVAEDLNGDGLTDV-VVSAPLNALGDSYDVGAIYVFI--NK 335
            ..: :||......|:|:|.|||..:...|.:.||:|:: :|:||:.....:.:.|.:||::  .:
Mouse   466 KKDGVVRVAQSLQGDQIGSYFGSELCPLDTDKDGITNILLVAAPMFLGPQNKETGRVYVYMVGQQ 530

  Fly   336 GLFKFEKKIIRLPLSSGARFGSSLSKVGDINHDGYNDLAVGAPF--AGNGAVFIFLGSEHGLRDE 398
            .|...: ..::...|..:|||.:::.:.|:||||:.|:|||||.  ...||::::.|::.|:|..
Mouse   531 NLLMLQ-GTLQPDRSQDSRFGFAMAALPDLNHDGFTDVAVGAPLEDGHRGALYLYHGTQTGIRPH 594

  Fly   399 PSQRLDAPSREPGPYGAHMFGQGLSRGSDIDGNGFNDLAIGAPGAEAVYLYRAYPVVKIHAT--- 460
            |:||:.|.|.   |.....||:.:....|:||:...|:|:||.|  |..|:.:.|::.:..|   
Mouse   595 PTQRIAAVSM---PQALRYFGRSVDGRLDLDGDDLVDVAVGAHG--AAVLFSSQPIIHLIPTLDV 654

  Fly   461 -------VRSESRAIRPEQETITVTACYRLETTSKARQMQQQELTFRMTIDELL--QRVSF--AP 514
                   |:.:.:....|...:|...|:::.:.:..|..::..:.|..::||..  .|..|  :.
Mouse   655 MPPHISVVQKDCKRRGQEAACLTAALCFQVVSQTPGRWDRRFYIRFSASLDEWTAGARAVFDGSG 719

  Fly   515 MRTNEVSFQAQAGLSGSCRNFSVGVHYTGGIFTPIDLELHYEL---AKKIPHSHEAFCESCAVVD 576
            .|.:....|...| :.:|.........|.....|:.|.:.:.|   .|..|...|.   |...:.
Mouse   720 QRLSPRQLQLSVG-NVTCEQLHFHALDTSDYLRPVALTVTFALDNTTKPGPVLAEG---SSTTIR 780

  Fly   577 PLEPKYATGTLSFMTGCAA-HVCVSDLQL-SSKDVNSS-----FIFGSLEVLSFSYEITNSGEPA 634
            .|.|        |...|.. :.||:||.| :..|:..|     .:.|..:.:..|..:.|..|.|
Mouse   781 KLIP--------FSKDCGPDNECVTDLVLQADMDIRGSRKSPFVVQGGRQKVLVSATLENKKENA 837

  Fly   635 YVAQFNVTSSARL------PFAK-VPGNCRV-RHEVMLCDLNGGRALARGDSESLTIIFDVT--- 688
            |....:::.|..|      |.|| |...|.| .....||.: |......|...|..:.|:.:   
Mouse   838 YNTSLSLSFSRNLHLASLTPQAKSVKVECAVPSPHTRLCTV-GHPVFQTGAKVSFLLEFEFSCTF 901

  Fly   689 QLSGQSLTIEAAVSSAGMDQNPKDNTMSTTISLREYAEIDASGGPIDGHIALKEYPYSAEVNNSY 753
            .||...:.:.|:.||..|::..:|||..|:..:|           .:.|:.     :|:| :..:
Mouse   902 LLSQVFVRLTASSSSLEMNETLQDNTAQTSAYIR-----------YEPHLV-----FSSE-STLH 949

  Fly   754 EFKSH-------GPSIIDELTVYVDVPIAYTVTGSAGIKSIFNISSLQMQATHGSELVPIKLYDQ 811
            .::.|       ||....:.|:.|.....:.|:|..       ||:|.....||.          
Mouse   950 RYEVHPYRTLPMGPGPEFKTTLRVQNLGCHVVSGLV-------ISALLPAVAHGG---------- 997

  Fly   812 TNTLAKEYPLEDS---SRRANRKRRELQQDQ-YAIMPDVNISDILTKENLPANRTLVLDCLRGNW 872
                  .|.|..|   |..|:...:.|.:.. :.:.|:         |...|:|      |.|:.
Mouse   998 ------NYFLSLSQVISGNASCTVQNLTEPPGFPVHPE---------ELQHASR------LNGSN 1041

  Fly   873 TIC--VRSQMRVQLKPEQPIDLRISFKVDLNDFVNTFDYLVIFTNVEMFKEG-DSTSIAL----K 930
            :.|  ||..:.:..|..: |.:|: .::..|:|.....:..: |.|..||.| :..|:.|    .
Mouse  1042 SRCQVVRCHLGLLAKGTE-ISVRL-LRLVHNEFFRRAKFKSV-TVVSTFKLGTEEGSVLLLNEAS 1103

  Fly   931 RNLKPNV-IFNYSETPLPIWYIILSLIAGHLLLGAMTYILYKLRFFKRGKKEELKRLLEEHRSET 994
            |:.:.:: :.....|.:.:|.::.|::.|.|||..:.:.|:||.||.|      |::.:|..||.
Mouse  1104 RSSESHLEVIQTHPTLISLWILVGSVLGGLLLLALLVFCLWKLGFFTR------KKIPKEEESEE 1162

  Fly   995 K 995
            |
Mouse  1163 K 1163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS5NP_611808.2 VCBS 302..375 CDD:338792 21/75 (28%)
Int_alpha 351..403 CDD:214549 21/53 (40%)
Int_alpha 417..463 CDD:214549 15/55 (27%)
Integrin_alpha2 451..836 CDD:337057 86/429 (20%)
Itga10NP_001289400.1 Int_alpha 41..81 CDD:214549
vWA_integrins_alpha_subunit 166..346 CDD:238746 36/191 (19%)
Int_alpha 482..532 CDD:214549 14/49 (29%)
Int_alpha 545..599 CDD:214549 21/53 (40%)
Integrin_alpha2 642..1049 CDD:285619 95/474 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167832022
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.