DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ItgaPS5 and Itga5

DIOPT Version :9

Sequence 1:NP_611808.2 Gene:ItgaPS5 / 37732 FlyBaseID:FBgn0034880 Length:1018 Species:Drosophila melanogaster
Sequence 2:NP_034707.5 Gene:Itga5 / 16402 MGIID:96604 Length:1053 Species:Mus musculus


Alignment Length:1144 Identity:281/1144 - (24%)
Similarity:446/1144 - (38%) Gaps:273/1144 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LFLIFLALKYQSNAMNFSPLPNRVIDAPKHLKTRMIQVRSSYFGYSL-VIRP----TSIFVGAPR 64
            |.|:......|....|.......|:..|.          .|.||:|: ..||    .|:.||||:
Mouse    31 LLLLLWPPPLQVGGFNLDAEAPAVLSGPP----------GSLFGFSVEFYRPGRDGVSVLVGAPK 85

  Fly    65 AQSTLESQGSINETGAVYRCPLASG--SCSHYVLNDKLN------------------KQFQWLGG 109
            |.:   ||..:.:.||||.||..:.  .|:....:.|.:                  |..||.|.
Mouse    86 ANT---SQPGVLQGGAVYVCPWGTSPIQCTTIQFDSKGSRILESSLYSAKGEEPVEYKSLQWFGA 147

  Fly   110 SMDGGTKDTDKLLVCAPRFFVPKNKN-YGQMRGICYWVRDTVADTPPLSDVRTISLIP------S 167
            ::   ......:|.|||.:.....|: .....|.||...:..        .|.:...|      |
Mouse   148 TV---RAHGSSILACAPLYSWRTEKDPQNDPVGTCYLSTENF--------TRILEYAPCRSDFGS 201

  Fly   168 QAEEHFMLELGLSAHVTDDNSGFLIGAPGVRSWKGSVLVHRGEDLA-----------AQGSYAVK 221
            .|.:.: .:.|.||..| .....::|.||...|:|.:|....|.::           .||....:
Mouse   202 AAGQGY-CQGGFSAEFT-KTGRVVLGGPGSYFWQGQILSATQEQISESYYPEYLINPVQGQLQTR 264

  Fly   222 MLDS-WDWVKNHFTYVGYALSSGYFSSNNRTSLLYVTTAPSSVLNTGKAYIFDVVGEIVRKLHVF 285
            ...| :|     .:|:||:::.|.||.::...  :|...|...|..|  |:..:.|..:..|:..
Mouse   265 QASSVYD-----DSYLGYSVAVGEFSGDDTED--FVAGVPKGNLTYG--YVTVLNGSDIHSLYNV 320

  Fly   286 HGEQLGEYFGYSVVAEDLNGDGLTDVVVSAPL----NALGDSYDVGAIYVFINK----------- 335
            .|||:..||||:|.|.|.|||||.|::|.|||    .|.|...:||.:|:::.:           
Mouse   321 SGEQMASYFGYAVAATDTNGDGLDDLLVGAPLLMERTADGRPQEVGRVYIYLQRPAGIDPTPTLT 385

  Fly   336 --GLFKFEKKIIRLPLSSGARFGSSLSKVGDINHDGYNDLAVGAPFAG---NGAVFIFLGSEHGL 395
              |..:|            :||||||:.:||::.|||||:|:||||.|   .|.||||.|...||
Mouse   386 LTGQDEF------------SRFGSSLTPLGDLDQDGYNDVAIGAPFGGEAQQGVVFIFPGGPGGL 438

  Fly   396 RDEPSQRLD---APSREPGPYGAHMFGQGLSRGSDIDGNGFNDLAIGAPGAEAVYLYRAYPVVKI 457
            ..:|||.|.   |..|.|     ..||..|..|.|:||||:.||.:|:.|.:...:||..|::..
Mouse   439 STKPSQVLQPLWAAGRTP-----DFFGSALRGGRDLDGNGYPDLIVGSFGVDKALVYRGRPIISA 498

  Fly   458 HATVRSESRAIRPEQETITV----TACYRLETTSKAR-QMQQQELTFRMTIDEL--------LQR 509
            .|::........||:.:.::    .:|..|.....|. :.....:.|.:.: :|        ::|
Mouse   499 SASLTIFPSMFNPEERSCSLEGNPVSCINLSFCLNASGKHVPNSIGFEVEL-QLDWQKQKGGVRR 562

  Fly   510 VSF--APMRTNEVSFQAQAGLSGSCRNFSVGVHYTGGI---FTPIDLELHYELAKKIP-HSHEA- 567
            ..|  :...|...:...|.|....||...:.:......   .:||.:.|::.|..|.| .||.. 
Mouse   563 ALFLTSKQATLTQTLLIQNGAREDCREMKIYLRNESEFRDKLSPIHIALNFSLDPKAPMDSHGLR 627

  Fly   568 ----FCESCAVVDPLEPKYATGTLSFMTGCAA-HVCVSDLQLSSKDVNSSFIFGSLEVLSFSYEI 627
                :.....:.|..:         .:..|.. ::||.||||...........|....|:.::..
Mouse   628 PVLHYQSKSRIEDKAQ---------ILLDCGEDNICVPDLQLDVYGEKKHVYLGDKNALNLTFHA 683

  Fly   628 TNSGE-PAYVAQFNVTSSARLPFA---KVPGN-----CRV----RHEVMLCDLNGGRALARGDSE 679
            .|.|| .||.|:..||:.....::   :.|||     |..    :...::|||  |..:..|.|.
Mouse   684 QNLGEGGAYEAELRVTAPLEAEYSGLVRHPGNFSSLSCDYFAVNQSRQLVCDL--GNPMKAGTSL 746

  Fly   680 SLTIIFDVTQLSGQSLTI--EAAVSSAGMDQNPKDNTMSTTISLREYAEIDASG----------- 731
            ...:.|.|..|.....||  :..:.|..:: |.:.|.:|..:|:...|::..:|           
Mouse   747 WGGLRFTVPHLQDTKKTIQFDFQILSKNLN-NSQSNVVSFPLSVEAQAQVSLNGVSKPEAVIFPV 810

  Fly   732 ---GPIDGHIALKEYPYSAEVNNSYEFKSHGPSIIDELTVYVDVPIAYTVTGSAGIKSIFNISSL 793
               .|.|.  ..||......|::.||..:.|||.|.:..:.:..|                    
Mouse   811 SDWNPQDQ--PQKEEDLGPAVHHVYELINQGPSSISQGVLELSCP-------------------- 853

  Fly   794 QMQATHGSELVPI-KLYDQTNTLAKEYPLEDSSRRANRKRRELQQDQYAIMPDVNISDILTKE-- 855
              ||..|.:|:.: |:...:|..:...|        |.:..||.       |:.:...:..:|  
Mouse   854 --QALEGQQLLYVTKVTGLSNCTSNYTP--------NSQGLELD-------PETSPHHLQKREAP 901

  Fly   856 --NLPANRTLVLDCLRGNWTICVRSQMRVQLKP---EQPIDLRISFKVDLNDFVNTFDYLVIFTN 915
              :..|:.|.||.|....   |.|  :|.:..|   ::...|::.|:|....|:.. :|......
Mouse   902 GRSSTASGTQVLKCPEAK---CFR--LRCEFGPLHRQESRSLQLHFRVWAKTFLQR-EYQPFSLQ 960

  Fly   916 VEMFKEGDSTSIALK------------RNLKPNVIFNYSETP----LPIWYIILSLIAGHLLLGA 964
            .|...|      |||            :.|:......:::..    :|:|.|||:::.|.||||.
Mouse   961 CEAVYE------ALKMPYQILPRQLPQKKLQVATAVQWTKAEGSNGVPLWIIILAILFGLLLLGL 1019

  Fly   965 MTYILYKLRFFKR----GKKEELKRLLEEHRSETKEPAT 999
            :.|:||||.||||    |...|        :::.|.|||
Mouse  1020 LIYVLYKLGFFKRSLPYGTAME--------KAQLKPPAT 1050

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS5NP_611808.2 VCBS 302..375 CDD:338792 31/89 (35%)
Int_alpha 351..403 CDD:214549 30/54 (56%)
Int_alpha 417..463 CDD:214549 17/45 (38%)
Integrin_alpha2 451..836 CDD:337057 85/439 (19%)
Itga5NP_034707.5 FG-GAP 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 46..111 23/77 (30%)
Int_alpha 59..117 CDD:214549 21/70 (30%)
FG-GAP 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 131..191 13/70 (19%)
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 196..248 13/53 (25%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 262..314 14/60 (23%)
Int_alpha 271..>313 CDD:214549 13/50 (26%)
FG-GAP 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 315..380 26/64 (41%)
Int_alpha 325..382 CDD:214549 22/56 (39%)
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 381..440 29/70 (41%)
Int_alpha 392..446 CDD:214549 31/65 (48%)
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 444..507 22/67 (33%)
Int_alpha 458..510 CDD:214549 17/51 (33%)
Integrin_alpha2 493..925 CDD:285619 95/488 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 879..910 7/45 (16%)
GFFKR motif 1024..1028 3/3 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167832081
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.