DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ItgaPS5 and Itga2b

DIOPT Version :9

Sequence 1:NP_611808.2 Gene:ItgaPS5 / 37732 FlyBaseID:FBgn0034880 Length:1018 Species:Drosophila melanogaster
Sequence 2:NP_034705.2 Gene:Itga2b / 16399 MGIID:96601 Length:1033 Species:Mus musculus


Alignment Length:1094 Identity:283/1094 - (25%)
Similarity:443/1094 - (40%) Gaps:254/1094 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 SYFGYSLVIR-----PTSIFVGAPRAQSTLESQGSINETGAVYRCPLAS--GSCSH--YVLNDKL 100
            |:||:|:...     ..||.||||||.:     .|..|||||:.||..:  |.|:.  :.|.|:.
Mouse    48 SHFGFSVDFHKDKHGSVSIVVGAPRALN-----ASQEETGAVFLCPWKANGGKCNPLLFDLRDET 107

  Fly   101 N----------KQFQWLGGSMDGGTKDTDKLLVCAP--RFFVPKNKNYGQMR--GICYWVRDTVA 151
            .          |..|.||.|:   ....|.::.|||  .:.|.:.::..:..  |.|:..:....
Mouse   108 RNLGFQIFQTFKTGQGLGASV---VSWNDVIVACAPWQHWNVLEKRDEAEKTPVGGCFLAQLQSG 169

  Fly   152 DTPPLSDVRTISLIPSQAE----EHFMLELGLSAHVTDDNSGFLIGAPGVRSWKGSVLVHRGEDL 212
            .....|..|..::....||    :....|.|.|..||.... .::||||...:.|.:.....|::
Mouse   170 GRAEYSPCRANTMSSVYAESFRGDKRYCEAGFSLAVTQAGE-LVLGAPGGYFFLGLLARVPIENI 233

  Fly   213 AAQGSYAVKMLDSWDWVKNHFT-----------YVGYALSSGYFSSNNRTSLLYVTTAPSSVLNT 266
            .:  ||....| .|......||           |.||:::.|.|..:..|: .||:.||:.....
Mouse   234 IS--SYRPGTL-LWHVSNQRFTYDNSNPVFFDGYRGYSVAVGEFDGDPSTT-EYVSGAPTWSWTL 294

  Fly   267 GKAYIFDVVGEIVRKLHVFHGEQLGEYFGYSVVAEDLNGDGLTDVVVSAPL----NALGDSYDVG 327
            |...|.|   ...:.||..||||:..|||:||...|:||||..|::|.|||    .|.....:||
Mouse   295 GAVEILD---SYYQPLHRLHGEQMASYFGHSVAVTDVNGDGRHDLLVGAPLYMESRADRKLAEVG 356

  Fly   328 AIYVFIN-KGLFKFEKKIIRLP--LSSG----ARFGSSLSKVGDINHDGYNDLAVGAPF---AGN 382
            .:|:|:. ||     .:.:..|  |.:|    .||||:::.:||:|.|||||:||.||:   :|.
Mouse   357 RVYLFLQPKG-----PQALSTPTLLLTGTQLYGRFGSAIAPLGDLNRDGYNDIAVAAPYGGPSGQ 416

  Fly   383 GAVFIFLGSEHGLRDEPSQRLDAPSREPGPYGAHMFGQGLSRGSDIDGNGFNDLAIGAPGAEAVY 447
            |.|.||||...||...|||.||:|.    |.|:. ||..|....|||.||:.||.:||.||..|.
Mouse   417 GQVLIFLGQSEGLSPRPSQVLDSPF----PTGSG-FGFSLRGAVDIDDNGYPDLIVGAYGASKVA 476

  Fly   448 LYRAYPVVKIHATVR-SESRAIRPE------QETITVTACYRLETTSKA---RQMQQQELTFRMT 502
            :|||.|||.  |||: ....::.|.      .:|.|..:|:.::....|   ...|:..|...:.
Mouse   477 VYRAQPVVM--ATVQLMVQDSLNPTLKNCVLDQTKTPVSCFNIQMCVGATGHNIPQKLHLKAELQ 539

  Fly   503 IDELLQRVSFAPMRTNEV----SFQAQAGLSGSCRNFSVGVHYTGGIF-----------TPIDLE 552
            :|  ||:    |.:...|    |.||...||.........:.:|.|.|           :||.|.
Mouse   540 LD--LQK----PRQGRRVLLLASQQASLTLSLDLGGRDKPICHTTGAFLRDEADFRDKLSPIVLS 598

  Fly   553 LHYELAKKIPHSHEAFCESCAVVDPLEPKYATGTLSFMTGCAAHV---------------CVSDL 602
            |:..                     |.|:...|..:.:.....||               ||..|
Mouse   599 LNVS---------------------LPPEETGGAPAVVLHGETHVQEQTRIILDCGEDDLCVPQL 642

  Fly   603 QLSSKDVNSSFIFGSLEVLSFSYEITNSGEPAYVAQFNVTSSARLPFAKVPGN--------CRVR 659
            :|::...:|..:.|:..||....|..|.||.||.|:..|.......:.:...|        |..:
Mouse   643 RLTATAGDSPLLIGADNVLELKIEAANDGEGAYEAELAVHLPPGAHYMRALSNIEGFERLVCTQK 707

  Fly   660 HE----VMLCDLNGGRALARGDSESLTIIFDVTQL--SGQSLTIEAAVSSAGMDQNPKDNTMSTT 718
            .|    |.||:|  |..:.:.....:|::..|..|  :|:|::.:..|.|.. .|||....:...
Mouse   708 KENESRVALCEL--GNPMKKDTRIGITMLVSVENLEEAGESVSFQLQVRSKN-SQNPNSKVVMLP 769

  Fly   719 ISLREYAEIDASGG--PIDGHIALKEYPYSAE--------VNNSYEFKSHGPSIIDELTVYVDVP 773
            ::::..|.::..|.  |....:|.:|.....|        :.::||..:.||..::.|.:.:.:|
Mouse   770 VAIQAEATVELRGNSFPASLVVAAEEGDREQEDLDRWVSRLEHTYELHNIGPGTVNGLRLLIHIP 834

  Fly   774 IAYTVTGSAGIKSIFNISSLQMQ-----ATHGSELVPIKLYDQTNTLAKEYPLEDSSRRAN--RK 831
                  |.:....:..|..:|.|     :|..|..|..||         ..|...|.|..:  |:
Mouse   835 ------GQSQPSDLLYILDVQPQGGLLCSTQPSPKVDWKL---------STPSPSSIRPVHHQRE 884

  Fly   832 RREL--------QQDQYAIMPDVNISDILTKENLPANRTLVLDC-----LRGNWTICVRSQMRVQ 883
            ||:.        |||...:..|.:.|            ..|::|     :||.     |:.:.||
Mouse   885 RRQAFLQGPKPGQQDPVLVSCDGSAS------------CTVVECELREMVRGQ-----RAMVTVQ 932

  Fly   884 L---------KPEQPIDLRISFKVDLNDFVNTFDYLVIFTNVEMFKEGDSTSIALKRNLKPNVIF 939
            :         :|::...|:.....:    |::..|.|   .|.....|.:       .::..::.
Mouse   933 VMLGLSSLRQRPQEQFVLQSHAWFN----VSSLPYSV---PVVSLPSGQA-------RVQTQLLR 983

  Fly   940 NYSETPLPIWYIILSLIAGHLLLGAMTYILYKLRFFKRGKKEELKRLLEEHRSE 993
            ...|..:|:|::::.::.|.|||..:...::|..||||.:..     |||...|
Mouse   984 ALEERAIPVWWVLVGVLGGLLLLTLLVLAMWKAGFFKRNRPP-----LEEDEEE 1032

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS5NP_611808.2 VCBS 302..375 CDD:338792 32/83 (39%)
Int_alpha 351..403 CDD:214549 29/58 (50%)
Int_alpha 417..463 CDD:214549 24/46 (52%)
Integrin_alpha2 451..836 CDD:337057 97/463 (21%)
Itga2bNP_034705.2 FG-GAP 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 35..96 21/52 (40%)
Int_alpha 46..102 CDD:214549 22/58 (38%)
FG-GAP 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 109..173 12/66 (18%)
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 184..237 13/55 (24%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 252..304 14/55 (25%)
FG-GAP 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 305..370 28/69 (41%)
Int_alpha 315..366 CDD:214549 20/50 (40%)
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 372..431 28/58 (48%)
Int_alpha 383..437 CDD:214549 28/53 (53%)
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 434..495 31/67 (46%)
Int_alpha 444..>484 CDD:214549 20/40 (50%)
Integrin_alpha2 480..916 CDD:285619 103/494 (21%)
GFFKR motif 1017..1021 2/3 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167832072
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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