DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ItgaPS5 and itga11

DIOPT Version :10

Sequence 1:NP_611808.2 Gene:ItgaPS5 / 37732 FlyBaseID:FBgn0034880 Length:1018 Species:Drosophila melanogaster
Sequence 2:XP_017947982.1 Gene:itga11 / 100489152 XenbaseID:XB-GENE-483822 Length:1188 Species:Xenopus tropicalis


Alignment Length:974 Identity:246/974 - (25%)
Similarity:399/974 - (40%) Gaps:255/974 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 VADTPPLSDV------RTISLI--PSQAEEHFMLEL---GLSAHVTDDNSGFLIGAPGVRSWKGS 203
            |.|...|.|:      |..||.  .::.|..|.||:   |.|:||.:|  |.|:||.|...|.|:
 Frog   335 VTDEAALKDIVDALGERIFSLEGGTNKNETSFGLEMSQAGFSSHVVED--GILLGAVGAYDWNGA 397

  Fly   204 VL--VHRGEDLAAQGSYAVKMLDSWDWVKNHFTYVGYALSSGYFSSNNRTSLLYVTTAPSSVLNT 266
            ||  ...|:.:..:.||..:..|.   :|||..|:||.::|.......|   :||..|| ...:|
 Frog   398 VLKETSSGKVIPRRESYLKEFPDE---LKNHGAYLGYTVTSVMTWQRVR---IYVAGAP-RFNHT 455

  Fly   267 GKAYIFDVVGEIVRKLH-VFHGEQLGEYFGYSVVAEDLNGDGLTDV-VVSAPLNALGDSYDVGAI 329
            ||..:|.:.|.....:| ...|.|:|.|||..:.:.|::|||:||: :|.||:..: |.::.|.:
 Frog   456 GKVIVFTMHGAENMTIHQALQGNQIGSYFGGEMDSVDVDGDGVTDILLVGAPMYFI-DGWERGRV 519

  Fly   330 YVFINKGLFKFEKKIIR------LPLSSGARFGSSLSKVGDINHDGYNDLAVGAPFAGN--GAVF 386
            .||:.:     |::.|.      |..|..:|||||::.|.|:|.|.|||:.||||...|  ||::
 Frog   520 SVFVLR-----ERQFIHNGFLQDLNSSQNSRFGSSIAAVPDLNQDLYNDVVVGAPLEDNHKGAIY 579

  Fly   387 IFLGSEHGLRDEPSQRLDAPSREPG--PYGAHMFGQGLSRGSDIDGNGFNDLAIGAPGAEAVYLY 449
            ||.|....:..:..||:.|....||  .:|.::.|:     .|::.:|..|||:|:.| .||.|:
 Frog   580 IFHGLRKNILKKYKQRISAAELAPGLVYFGCNIHGE-----MDMNEDGLVDLAVGSMG-NAVLLW 638

  Fly   450 RAYPVVKIHATVRSESRAI--------RPEQETITVTACYRLETTSKARQMQQQE--LTFRMTID 504
             ...||||:||:..|...|        |..:|...::|........||:|.|.|.  :.:.::||
 Frog   639 -TRSVVKINATMHFEPPKINIFSKDCHRNGREATCMSAFICFSPMFKAQQFQGQNVAIKYNVSID 702

  Fly   505 E--LLQRVSFAPMRTNEVSFQAQAGLSG--SCRNFSVGVHYTGGIFTPIDLELHYELAKKIPHSH 565
            |  .:.|.....:..::...:.....||  .|:..:..|..|.....||...|.|||        
 Frog   703 ERRYIPRAIIDDIGGDKHFVKTIRATSGHNQCQQLNFHVLDTADYVKPITFSLEYEL-------- 759

  Fly   566 EAFCESCAVVDPLEPKYATGTLSFMTGC-AAHVCVSDLQLSSK-DV------------------- 609
             ||.:...|::...|.....::.|..|| ....||.||.|..| |:                   
 Frog   760 -AFSDQGPVLEEDWPTSLKVSVPFWNGCNQDERCVPDLYLDVKHDIPTALEYCQRFLYRTQSACT 823

  Fly   610 -------NSSFIFG------SLEVLSFSYEITNSGEPAYVAQFNVTSSARLPFAKV--------- 652
                   ||.||..      :|||:     :.|.||.||....|::.|..|.||.:         
 Frog   824 EFISAFDNSVFIIQRSRRRVALEVV-----LENRGENAYSTALNISHSQNLQFASLITKEDSDIK 883

  Fly   653 -----------PGNCRVRHEVMLCDLNGGRALARGDSESLTIIFDVTQLSGQSLTIEAAVSSAGM 706
                       ...|.|.:...       ||.|:   .:..:.|:.::.  |.|.......|||.
 Frog   884 IECKSDDRFPHTKTCNVSYPFF-------RAKAK---VAFRLDFEFSKY--QFLPFLQVHLSAGS 936

  Fly   707 DQNPKDNTMSTTISLREYAEIDASGGPIDGHIALKEYPYSAE------------VNNSYEFKSHG 759
            |...:::|......|.::.....|......|.:|..|..::|            .|:|::.::.|
 Frog   937 DSEEQESTRFDNEVLLDFHLKYESDLLFTRHSSLNHYEITSEGSADRYNAIGPPFNSSFKIQNLG 1001

  Fly   760 --PSIIDELTVYVDVPIAYTVTGSAGIKSIFNISSLQMQATHGSELVPIKLYDQTNTLAKEYPLE 822
              |   :|:.:.:.||:|     :.|...:..:.||              :.||.|.:...:   
 Frog  1002 FFP---EEINLKITVPVA-----TRGGNRLLFLHSL--------------ISDQENAVCNIW--- 1041

  Fly   823 DSSRRANRKRRELQQDQYAIMPDVN--ISDILTKENLPANRTLVLDC-------------LRGN- 871
               ..:...||:..::..:.:|.:|  .||:::           :||             |.|: 
 Frog  1042 ---GNSTDYRRKPTEEDLSRVPQLNHSNSDVIS-----------IDCVLILASNQEASFILHGDL 1092

  Fly   872 WTICVRSQMRVQLKPEQPIDLRISFKVDLNDFVNTFDYLVIFTNVE-------MFKEGDST---S 926
            |:...|:               ::|:     .||    :|:|..::       :|:|.:.|   :
 Frog  1093 WSRSFRA---------------MNFR-----SVN----VVVFAALQRKFQSPFIFREEEPTRQIT 1133

  Fly   927 IALKRNLKPNVIFNYSETPLPIWYIILSLIAGHLLLGAMTYILYKLRFFKRG--KKEELKRLLE 988
            .|:.:.         .|..:|||.||.|.:.|.|||..:...|:||.||||.  ::||..:.:|
 Frog  1134 FAISKQ---------EEWEVPIWVIITSTLGGLLLLALLVLALWKLGFFKRSHHEREEENKDME 1188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS5NP_611808.2 FG-GAP 294..332 CDD:460357 13/38 (34%)
Int_alpha 351..403 CDD:214549 23/53 (43%)
Int_alpha 417..463 CDD:214549 17/45 (38%)
Integrin_alpha2 453..837 CDD:462478 97/465 (21%)
itga11XP_017947982.1 Int_alpha 38..91 CDD:214549
vWA_integrins_alpha_subunit 166..344 CDD:238746 3/8 (38%)
Int_alpha 480..>522 CDD:214549 15/42 (36%)
Int_alpha 542..596 CDD:214549 23/53 (43%)
Integrin_alpha2 640..1039 CDD:462478 95/446 (21%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.