DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ItgaPS5 and itga8

DIOPT Version :9

Sequence 1:NP_611808.2 Gene:ItgaPS5 / 37732 FlyBaseID:FBgn0034880 Length:1018 Species:Drosophila melanogaster
Sequence 2:XP_002939074.2 Gene:itga8 / 100487624 XenbaseID:XB-GENE-961825 Length:1081 Species:Xenopus tropicalis


Alignment Length:1078 Identity:267/1078 - (24%)
Similarity:444/1078 - (41%) Gaps:232/1078 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 SYFGYSLVI-----RPTSIFVGAPRAQSTLESQGSINETGAVYRCP----LASGSCSHYVL---- 96
            ||||||:..     ..|||.:|||:|.:   ||..|.|.||||.||    |.:| |.....    
 Frog    73 SYFGYSVDFYLPDSAKTSILIGAPKANT---SQPQIVEGGAVYYCPFPDTLPTG-CKQIPFDITN 133

  Fly    97 --NDKLN--------KQFQWLGGSMDGGTKDTDKLLVCAPRFFVPKNKNYGQMR--GICYWVRDT 149
              |.:||        |..||.|.::   ....:|::.|||.:.....|...:..  |.||.....
 Frog   134 NRNIRLNGTKQPVEFKSNQWFGATV---RAHKEKVVACAPLYHWRSIKPISEKDPVGTCYIAIQN 195

  Fly   150 VADTPPLSDVRTISLIPS---QAEEHFMLELGLSAHVTDDNSGFLIGAPGVRSWKGSVLVHRGED 211
            .:.....|..|:....|:   ..:..|.|:.       ..|....:|.||...|:|.|......|
 Frog   196 FSAYAEYSPCRSDLADPAGQGVCQAGFSLDF-------YKNGDLALGGPGSFYWQGQVFTASIAD 253

  Fly   212 L-----------AAQGSYAVKMLDS-WDWVKNHFTYVGYALSSGYFSSNNRTSLLYVTTAPSSVL 264
            :           ...|....||..| :|     .:|:||:::.|.|:.::...:  |...|....
 Frog   254 IIKDYSFKSIIRKISGEKQTKMAQSAYD-----DSYLGYSVAVGEFTDDSVQEV--VAGVPRGAQ 311

  Fly   265 NTGKAYIFDVVGEIVRKLHVFHGEQLGEYFGYSVVAEDLNGDGLTDVVVSAPL----NALGDSYD 325
            |.|  |:..:....:..:..|.|:|:..||||:|...|:|.|||.|::|.|||    ....:..:
 Frog   312 NFG--YVSIINSTDMTFIQNFTGDQMASYFGYTVAVSDVNNDGLDDILVGAPLFMDREFESNPRE 374

  Fly   326 VGAIYVFINKGLFKFEKKIIRLPLSSGARFGSSLSKVGDINHDGYNDLAVGAPFAG---NGAVFI 387
            ||.:|:::.:...:|....:........||||:::.:||:|.|||||:|||:||||   .|.|||
 Frog   375 VGKVYLYMQESALEFRDPQVLKGTEVFGRFGSAIAHLGDLNQDGYNDIAVGSPFAGEDRKGRVFI 439

  Fly   388 FLGSEHGLRDEPSQRLD-APSREPGPYGAHMFGQGLSRGSDIDGNGFNDLAIGAPGAEAVYLYRA 451
            :.|:.:||..:.||.|: |.:.:..|.|   ||..|...||||.|.:.||.:||.||....:|||
 Frog   440 YNGNSNGLNTDTSQILEGAWASQSMPAG---FGFTLRGDSDIDKNDYPDLIVGAFGAGKAVVYRA 501

  Fly   452 YPVVKIHATVRSESRAIRPEQET------------ITVTACYRLETTS-------KA-------- 489
            .||:.:.|.:......:.||.:|            .||..|..:...|       ||        
 Frog   502 RPVITVDAQLLLHPMILNPENKTCQLPNSEFLVTCFTVRVCVTVSGQSIPSNIVVKADLELDWLK 566

  Fly   490 ----------RQMQQQELTFRMTIDELLQRVSFAPMRTNEVSFQAQAGLSGSCRNFSVGVHYTGG 544
                      .:..|...:|.:.|::  ||:|                   .|.:|.|.:.....
 Frog   567 QKGAVKRTLFMESHQAHHSFDLIINK--QRLS-------------------QCLDFLVYLREESE 610

  Fly   545 I---FTPIDLELHYELAKKIPHSHEAFCESCAVVD----PLEPKYATGTLS----FMTGCAA-HV 597
            .   .|||.:.|:|.|.           ||..:.|    |:..:|...|:.    .:..|.. ::
 Frog   611 FRDKLTPISVNLNYSLD-----------ESAYLGDQELKPILNRYKKATIQEQAHILVDCGEDNM 664

  Fly   598 CVSDLQLSSKDVNSSFIFGSLEVLSFSYEITNSGEPAYVAQFNVTSSARLPFAKVPG-------- 654
            |:.||:||::...:..:.|....:.|.....|.||.||.|:..:.......:..:..        
 Frog   665 CIPDLKLSARPDKNQLVIGEENHILFIINTKNQGEGAYEAELRMIIPPEADYVGIERNMEGLRQL 729

  Fly   655 NCRVRHE----VMLCDLNGGRALARGDSESLTIIFDVTQL-SGQSLTIEAAVSSAGMDQNPKDNT 714
            ||..:.|    :::|||  |..:..|.:.|:.:.|.|.:| :..::|.:..:.|:..| ||..|.
 Frog   730 NCEYKMENESRLVVCDL--GNPMVAGTNLSVGLRFVVQRLETVDAITFDLYIKSSNKD-NPNSNF 791

  Fly   715 MSTTISLREYAEIDASGGPIDGHIAL-------KEYPYSAE-----VNNSYEFKSHGPSIIDELT 767
            :|..:::...|:::..|......|.|       ||.|...:     |.:.||..:.|||.|.|..
 Frog   792 VSLQVNITAVAQVEIRGVSHPPQIILPIPNWEPKEKPSEEKDVGPLVQHIYELHNIGPSAISETQ 856

  Fly   768 VYVDVPIAYTVTGSAGIKSIFNISS---LQMQATHGSELVPIKLYDQTNTLAKEYPLEDSSRRAN 829
            :.|..|   :.:....:..:|:|.:   |:.||......:.||..:..:|......|.::|....
 Frog   857 LNVGWP---SQSRDEFLLYVFHIQTEGPLKCQAGSAINTLNIKPSEPEDTPELAAFLRNTSVSHA 918

  Fly   830 RKRRELQQDQYAIMPDVNISDILTKENLPAN-------RTLVLDCLRGNWTICVRSQMRVQLKPE 887
            ..||           ||.:::.|.....|..       :.|::.|..|:.....|:.::::.:..
 Frog   919 VSRR-----------DVAVAEALRHIPTPTKLLNCTNVKCLMISCKVGHLGGGQRAVVKIRSRLW 972

  Fly   888 QPIDLRISFKVDLNDFVNTFDYLVIFTNVEMFK--------EGDSTSIALKRNL---KPNVIFNY 941
            .|     :|....||:.:    |:...:.|:.|        :..:.:|.:|.::   .||:.|  
 Frog   973 AP-----TFLQRKNDYYS----LIANVSFEVKKMPYDIQPAKLPAATILIKTSVIWATPNISF-- 1026

  Fly   942 SETPLPIWYIILSLIAGHLLLGAMTYILYKLRFFKRGK 979
               .:|:|.|:|:::.|.|:|..:|.:::|..||.|.:
 Frog  1027 ---AIPLWVILLAILLGILVLAILTLVMWKCGFFDRAR 1061

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS5NP_611808.2 VCBS 302..375 CDD:338792 26/76 (34%)
Int_alpha 351..403 CDD:214549 28/54 (52%)
Int_alpha 417..463 CDD:214549 20/45 (44%)
Integrin_alpha2 451..836 CDD:337057 96/461 (21%)
itga8XP_002939074.2 Int_alpha 71..130 CDD:214549 26/60 (43%)
Int_alpha 335..>385 CDD:214549 18/49 (37%)
Int_alpha 401..455 CDD:214549 28/53 (53%)
Int_alpha 468..510 CDD:214549 19/41 (46%)
Integrin_alpha2 501..952 CDD:369878 101/499 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.