DRSC/TRiP Functional Genomics Resources

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Protein Alignment pita and STP4

DIOPT Version :9

Sequence 1:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster
Sequence 2:NP_010235.1 Gene:STP4 / 851512 SGDID:S000002206 Length:490 Species:Saccharomyces cerevisiae


Alignment Length:473 Identity:91/473 - (19%)
Similarity:136/473 - (28%) Gaps:166/473 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 SPLEKPRAP--MTMVASKKLLVVPAKTAEPSET-----------PKKLLNT--MAKSSSQVIIED 150
            |.|..|..|  .|..:|.......:.|:.|::.           |..|..|  .:.|||.||:..
Yeast    70 STLNSPPPPPLTTSYSSYNSSACQSITSSPTDNTALAHNSKCYFPHSLSPTPLSSNSSSHVILPP 134

  Fly   151 VQVLESAM-VTPRTVAG---------SSPVPRR---SHAYELKVDN-NQELSMDDV--------Q 193
            :....:.: |..|...|         :|||||.   .|.:||...| |.......:        |
Yeast   135 ISSFTNLITVAEREFNGRSNSLHANFTSPVPRTVLDHHRHELTFCNPNNTTGFKTITPSPPTQHQ 199

  Fly   194 SMLEDMASEL--EKEFPDIPQKASPVKPKVLNKSSIRILNKGPAAPVEPRLATPKVKRDDSGNVA 256
            |:|......:  .|....:|....|  |.::.:...:.||...:|...|.:.:|......|...:
Yeast   200 SILPTAVDNVPRSKSVSSLPVSGFP--PLIVKQQQQQQLNSSSSASALPSIHSPLTNEHTSRYSS 262

  Fly   257 IVTEVLDSDLPLDDQDDPTKNAEKVATDVFPCPDCERSFPLQQLLEIHRLNHTRSRSFQCLLCEK 321
                      .|.|....||..:|.     .||.|.                             
Yeast   263 ----------SLKDSAKITKQRKKK-----ECPICH----------------------------- 283

  Fly   322 SFFSKYDLAKHNFVHTGERPFKCAICSKAFTRKALLHRHERTHTDVPKFICVYCEK--------- 377
            :|::.....|...:...:||.||.||.:.|.|...|.||::.|.. .:|:.:|..:         
Yeast   284 NFYANLSTHKSTHLTPEDRPHKCPICQRGFARNNDLIRHKKRHWK-DEFMQIYARESDNNSGADD 347

  Fly   378 -------------------------------------------------PFLSR-----QEMEKH 388
                                                             |:.|.     .|:..|
Yeast   348 QDDTARTSANNDSDDSNDKLAASSSSEETKLLKKNQLKSLYKIKGAFKCPYNSTLINLDMEVYPH 412

  Fly   389 AERHQKKRPFQC---GVCTKSFAFKQGLE--RHETVHSTN------LPFPCQHCERSFSTASKLA 442
            ..|.....|..|   ||.::...||..|:  ..|....|.      :|..|:||...|.....  
Yeast   413 KSRSLYFEPINCHQTGVFSRCDTFKNHLKALHFEYPPKTKKEDRGVVPGKCKHCGLQFPNVDV-- 475

  Fly   443 RHLVAHAGKRAYPCKYCH 460
             .|..|.||   .|.|.:
Yeast   476 -WLNKHVGK---GCGYSY 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitaNP_611806.3 zf-AD 17..92 CDD:214871
COG5048 <281..506 CDD:227381 44/254 (17%)
C2H2 Zn finger 288..308 CDD:275368 3/19 (16%)
C2H2 Zn finger 316..336 CDD:275368 2/19 (11%)
zf-H2C2_2 328..353 CDD:290200 8/24 (33%)
C2H2 Zn finger 344..364 CDD:275368 8/19 (42%)
C2H2 Zn finger 372..388 CDD:275370 4/78 (5%)
C2H2 Zn finger 400..420 CDD:275368 7/24 (29%)
C2H2 Zn finger 428..448 CDD:275368 5/19 (26%)
C2H2 Zn finger 456..476 CDD:275368 2/5 (40%)
C2H2 Zn finger 486..506 CDD:275368
HARE-HTH <566..625 CDD:294801
STP4NP_010235.1 COG5048 14..442 CDD:227381 78/418 (19%)
C2H2 Zn finger 279..296 CDD:275368 5/45 (11%)
C2H2 Zn finger 306..326 CDD:275368 8/19 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24390
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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