DRSC/TRiP Functional Genomics Resources

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Protein Alignment pita and WIP3

DIOPT Version :9

Sequence 1:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster
Sequence 2:NP_172306.1 Gene:WIP3 / 837349 AraportID:AT1G08290 Length:337 Species:Arabidopsis thaliana


Alignment Length:329 Identity:69/329 - (20%)
Similarity:101/329 - (30%) Gaps:112/329 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 QSMLEDMASELEKEFPDIPQKASPVKPKVLNK--------SSIRILNKGPAAPVEPRLATPKVKR 249
            ||.:..:...|....|..|...|.....:|||        |.|:..||.....::  :..||..|
plant    49 QSQMNMLERSLFLYQPQEPLNTSIQCLPLLNKLMENNSQASDIKEENKDDVVTLQ--IGFPKYHR 111

  Fly   250 DDSGNVAIVTEVLDSDLPLDDQDDPTKNAEKVATDVFPCPDCERSFPLQQLLE--IHRLNHTRSR 312
            ..|.:        .||:..|.|..|.|                     ::::|  :..:...|..
plant   112 GSSED--------GSDITFDHQKKPIK---------------------REIIEDGVVMMKKRRKM 147

  Fly   313 SF-------QCLLCEKSFFSKYDLAKHNFVHTGERPFKCAICSKAFTRKALLHRHERTH------ 364
            .|       ...:|.|.|:    :.....:|.|...|.|:||||.|.|...:..|...|      
plant   148 KFDEEIIDSDVEVCGKRFW----IPSPAQIHVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRK 208

  Fly   365 -------TDVPKFI----CVYC------------EKPFLSRQEMEKHAERHQKKRPFQCGVCTKS 406
                   |..|..|    |..|            .||....:.::.|.:|....:||.||.|.|:
plant   209 GADSLKGTIQPAAILRLPCYCCAEGCKNNINHPRSKPLKDFRTLQTHYKRKHGSKPFSCGKCGKA 273

  Fly   407 FAFKQGLERHETVHSTNLPFPCQHCERSFSTASKLARHLVAHAGKRAYPCKYCHKSYMLSHHLSR 471
            .|.|.....||           ::|                  ||..| |. |...:.....|..
plant   274 LAVKGDWRTHE-----------KNC------------------GKLWY-CT-CGSDFKHKRSLKD 307

  Fly   472 HLRT 475
            |:|:
plant   308 HIRS 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitaNP_611806.3 zf-AD 17..92 CDD:214871
COG5048 <281..506 CDD:227381 46/233 (20%)
C2H2 Zn finger 288..308 CDD:275368 1/21 (5%)
C2H2 Zn finger 316..336 CDD:275368 3/19 (16%)
zf-H2C2_2 328..353 CDD:290200 9/24 (38%)
C2H2 Zn finger 344..364 CDD:275368 8/19 (42%)
C2H2 Zn finger 372..388 CDD:275370 4/27 (15%)
C2H2 Zn finger 400..420 CDD:275368 8/19 (42%)
C2H2 Zn finger 428..448 CDD:275368 1/19 (5%)
C2H2 Zn finger 456..476 CDD:275368 5/20 (25%)
C2H2 Zn finger 486..506 CDD:275368
HARE-HTH <566..625 CDD:294801
WIP3NP_172306.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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