DRSC/TRiP Functional Genomics Resources

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Protein Alignment pita and jim

DIOPT Version :10

Sequence 1:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster
Sequence 2:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster


Alignment Length:413 Identity:90/413 - (21%)
Similarity:143/413 - (34%) Gaps:127/413 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   279 EKVATDV--FPCPDCERSFPLQQLLEIHRLNHTRSRSFQCLLCEKSFFSKYDLAKHNFVHTGERP 341
            :::.||.  |||.:|.:.|..|..|..|...|...:.|.|..|.:||..:..|.:|..:|:||:|
  Fly   348 DRIHTDARPFPCSECGKRFRQQSHLTQHLRIHANEKPFTCPYCSRSFRQRAILNQHIRIHSGEKP 412

  Fly   342 FKCAICSKAFTRKALLHRHERTHTDV--------------------------------------- 367
            |.|..|.|.|.:||:|::|.|||.||                                       
  Fly   413 FACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHPTLWPSDVPFPGEDNDTKGDIAGTGGGY 477

  Fly   368 --------------------------------------------PKFI-CVYCEKPFLSRQEMEK 387
                                                        |.:: |..|:|.|..:..:.:
  Fly   478 HDEDSQGTPDGSGGMHYPSYFKDGKGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQ 542

  Fly   388 HAERHQKKRPFQCGVCTKSFAFKQGLERHETVHSTNLPFPCQHCERSFSTASKLARHLVAHAGKR 452
            |...|.:.||:.|..|.|.|..:..|.:|..:|:...||.|.:|.|.|...:.|.:||..|.|::
  Fly   543 HGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEK 607

  Fly   453 AYPCKYCHKSYMLSHHLSRHLRTHTQTSDASFVCSECKVSYSNYNDLLDHALIHATASLKCPMCR 517
            .|.|..|.|.:.....|.:|.|||  ..|..|.|                         ..|.||
  Fly   608 PYKCGQCGKDFRQKAILDQHTRTH--QGDRPFCC-------------------------PMPNCR 645

  Fly   518 KQIEDIDSVESHMDQHKQSERHACEFCDHIFLTQKCLQRHIEDDHVVEMEPYQNEFEDDGEGEGG 582
            ::....:.|..|:|.|....            |.|..::..:.....:.:..|.:.:...:....
  Fly   646 RRFATENEVTKHIDNHMNPN------------TTKVRRQQQQQHQQQQQQQQQQQQQQQQQNNNA 698

  Fly   583 VDEKEEHLDDFEDMDNVKQEEFV 605
            |.:...||  ..|..::..::|:
  Fly   699 VAQVANHL--MNDAKSLAAQQFL 719

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitaNP_611806.3 zf-AD 17..92 CDD:214871
COG5048 <281..506 CDD:227381 75/310 (24%)
C2H2 Zn finger 288..308 CDD:275368 6/19 (32%)
C2H2 Zn finger 316..336 CDD:275368 6/19 (32%)
C2H2 Zn finger 344..364 CDD:275368 9/19 (47%)
C2H2 Zn finger 372..388 CDD:275370 4/15 (27%)
C2H2 Zn finger 400..420 CDD:275368 6/19 (32%)
C2H2 Zn finger 428..448 CDD:275368 7/19 (37%)
C2H2 Zn finger 456..476 CDD:275368 6/19 (32%)
C2H2 Zn finger 486..506 CDD:275368 1/19 (5%)
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368 0/2 (0%)
COG5048 355..666 CDD:227381 80/349 (23%)
C2H2 Zn finger 359..379 CDD:275368 6/19 (32%)
C2H2 Zn finger 387..407 CDD:275368 6/19 (32%)
C2H2 Zn finger 415..435 CDD:275368 9/19 (47%)
C2H2 Zn finger 527..547 CDD:275368 5/19 (26%)
C2H2 Zn finger 555..575 CDD:275368 6/19 (32%)
C2H2 Zn finger 583..603 CDD:275368 7/19 (37%)
C2H2 Zn finger 611..631 CDD:275368 6/19 (32%)
C2H2 Zn finger 639..661 CDD:275368 7/46 (15%)
Blue background indicates that the domain is not in the aligned region.

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