DRSC/TRiP Functional Genomics Resources

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Protein Alignment pita and trem

DIOPT Version :9

Sequence 1:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster
Sequence 2:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster


Alignment Length:466 Identity:111/466 - (23%)
Similarity:184/466 - (39%) Gaps:88/466 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 MLTEKR----VCRFCLT-----EQKLASIFEENPRVKTTANLPL-QIMAITA-IEVYAGDGMPGH 64
            |.||..    |||.||.     |:.|..||.|      ||:..| |::.|.| |.|...|..|..
  Fly     1 MKTESNEKWVVCRVCLNNPSEGEELLHDIFSE------TASTRLDQMLHICAGIPVSLDDNFPDK 59

  Fly    65 ICLECRLLFEHCYRFKQMCKRAETLLRQYPLTGNWPSPLEKPRAPMTMVASKKLLVVPAKTAEPS 129
            :|.:|......||:|:..|:|:...:...         |::..:.........||.:....:..|
  Fly    60 MCSKCVRCLRLCYKFRLTCQRSHQHIMDM---------LDREASNANAAGEGDLLSIAEDLSVES 115

  Fly   130 ETPKKLLNTMAKSSSQVIIEDVQVLESAMVTPRTVAGSSPVPRRSHAYELKVDNNQELSMDDVQS 194
                 :|.:....:||        |:..|    .|.|......:...|.::..:..:.:|.||..
  Fly   116 -----VLKSWEDYASQ--------LDGGM----KVEGEEDQQHQVITYVVEDGDTDDTNMFDVHD 163

  Fly   195 MLEDMASELEK-----EFPDIPQKASPVKPKVLNKSSIRILNKGPAAPVEPRLATPKVKRDDSGN 254
            ..:.:.:|:|:     |:.:.....:...|::..:       ||...   ..:||.:...::   
  Fly   164 PTQPVPNEIEEAETYAEYEEYELLTNENSPEIAQE-------KGSTG---TDVATEEPPEEE--- 215

  Fly   255 VAIVTEVLDSDLPLDDQDDPTKNAEKVATDVFPCPDCERS----------FPLQQLL--EIHRLN 307
              |..::||||   :|.|......||          |:||          .|..:..  ::.|..
  Fly   216 --IAEDILDSD---EDYDPTHAKPEK----------CDRSGRKPVAYHKNSPKVETFKKKVGRKP 265

  Fly   308 HTRSRSFQCLLCEKSFFSKYDLAKHNFVHTGERPFKCAICSKAFTRKALLHRHERTHTDVPKFIC 372
            ..:..::.|.:|...:.::..|.:|...|:|.:|.:|.||.:.|.:...|.||..|||....:.|
  Fly   266 RNKLSTYICDVCGNIYPTQARLTEHMKFHSGVKPHECEICGRGFVQNQQLVRHMNTHTGNRPYKC 330

  Fly   373 VYCEKPFLSRQEMEKHAERHQKKRPFQCGVCTKSFAFKQGLERHETVHSTNLPFPCQHCERSFST 437
            .||...|..|....||...|.|:||:.|.||:::|.:...|:.|:.:|:...|..|..|.:.|..
  Fly   331 NYCPAAFADRSTKTKHHRIHTKERPYVCDVCSRTFTYSDNLKFHKMIHTGEKPHVCDLCGKGFVK 395

  Fly   438 ASKLARHLVAH 448
            |.||..|...|
  Fly   396 AYKLRLHRETH 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitaNP_611806.3 zf-AD 17..92 CDD:214871 27/81 (33%)
COG5048 <281..506 CDD:227381 49/180 (27%)
C2H2 Zn finger 288..308 CDD:275368 5/31 (16%)
C2H2 Zn finger 316..336 CDD:275368 4/19 (21%)
zf-H2C2_2 328..353 CDD:290200 9/24 (38%)
C2H2 Zn finger 344..364 CDD:275368 7/19 (37%)
C2H2 Zn finger 372..388 CDD:275370 5/15 (33%)
C2H2 Zn finger 400..420 CDD:275368 6/19 (32%)
C2H2 Zn finger 428..448 CDD:275368 7/19 (37%)
C2H2 Zn finger 456..476 CDD:275368
C2H2 Zn finger 486..506 CDD:275368
HARE-HTH <566..625 CDD:294801
tremNP_650861.1 zf-AD 11..87 CDD:214871 27/81 (33%)
COG5048 <264..411 CDD:227381 44/143 (31%)
C2H2 Zn finger 274..294 CDD:275368 4/19 (21%)
zf-H2C2_2 287..311 CDD:290200 9/23 (39%)
C2H2 Zn finger 302..322 CDD:275368 7/19 (37%)
zf-H2C2_2 315..338 CDD:290200 9/22 (41%)
C2H2 Zn finger 330..350 CDD:275368 7/19 (37%)
zf-H2C2_2 345..367 CDD:290200 10/21 (48%)
C2H2 Zn finger 358..378 CDD:275368 6/19 (32%)
zf-H2C2_2 370..394 CDD:290200 6/23 (26%)
C2H2 Zn finger 386..406 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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