DRSC/TRiP Functional Genomics Resources

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Protein Alignment pita and CG4820

DIOPT Version :9

Sequence 1:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster
Sequence 2:NP_001097748.1 Gene:CG4820 / 41344 FlyBaseID:FBgn0037876 Length:362 Species:Drosophila melanogaster


Alignment Length:425 Identity:93/425 - (21%)
Similarity:154/425 - (36%) Gaps:111/425 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 KRVCRFC---LTEQKLASIFEENPR-----VKTTANLPLQIMAITAIEVYAGDGMPGHICLECRL 71
            |..||.|   :...:...||....|     |::..|..||.:          ..:|.|||.:|::
  Fly     2 KEFCRTCGKTVVADECLQIFTPAGRKLLQCVRSITNCWLQNV----------QDLPNHICTDCQV 56

  Fly    72 LFEHCYRFKQMCKRAETLL---RQYPLTGNWPSPLEKPRAPMTMVASKKLLVVPAKTAEPSETPK 133
            |.....:|::.|.:.|...   |:....|..|:.:|:.|                  .:.:..|.
  Fly    57 LLSQVQKFRRRCAKIEKYFARRRRRMNLGEAPAAMEQLR------------------VQQAAAPD 103

  Fly   134 KLLNTMAKSSSQVIIEDVQV-LESAMVTPRTVAGSSPVPRRSHAYELKVDNNQELSMDDVQSMLE 197
            .|......|:|.:.||.:|: :|.   .|:     :|.|.......|...|   ...:|:..:.|
  Fly   104 PLGIDELMSASDIKIEPIQLQMEE---DPQ-----APYPENQLEQALSYGN---APGEDILPLPE 157

  Fly   198 DMA---SELEKEFPDIPQKASPVKPKVLNKS-SIRILNKGPAAPVEPRLATPKVKRDDSGNVAIV 258
            |..   :|:.....:..|:.|....|:.:|. ::|:                       |...|.
  Fly   158 DYGEAQTEVATTTNEPAQRRSKNTAKIKSKKHTMRV-----------------------GRKLIH 199

  Fly   259 TEVLDSDLP--LDDQDDPTKNAEKVATDVFP--CPDCERSFPLQQLLEIHRLNHTRSRSFQCLLC 319
            .:|:|...|  :.|::.|:..         |  |..|.|.|.....|.:|.|.||.::.|:|..|
  Fly   200 VKVIDDKQPKRIVDRNGPSAK---------PCICEHCGRQFKDTSNLHVHLLRHTGTKPFECDQC 255

  Fly   320 EKSFFSKYDLAKHNFVHTGERPFKCAICSKAFTRKALLHRHERTHTDVPKFICVYCEK---PFLS 381
            .:..::.:.|.:|...|| |.|:.|..|...::..:...||||.          .|:|   | .|
  Fly   256 HQKCYTLHLLRRHQLKHT-EGPYACTFCGLEYSTNSSRVRHERE----------ACKKGRAP-QS 308

  Fly   382 RQEMEKHAERHQKKRPFQCGVCTKSFAFKQGLERH 416
            :.|:.|..|     |.|.|.||...|.......:|
  Fly   309 KWEIIKKGE-----RTFHCEVCDLWFLRAGNFTQH 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitaNP_611806.3 zf-AD 17..92 CDD:214871 19/85 (22%)
COG5048 <281..506 CDD:227381 39/141 (28%)
C2H2 Zn finger 288..308 CDD:275368 7/19 (37%)
C2H2 Zn finger 316..336 CDD:275368 4/19 (21%)
zf-H2C2_2 328..353 CDD:290200 8/24 (33%)
C2H2 Zn finger 344..364 CDD:275368 6/19 (32%)
C2H2 Zn finger 372..388 CDD:275370 5/18 (28%)
C2H2 Zn finger 400..420 CDD:275368 5/17 (29%)
C2H2 Zn finger 428..448 CDD:275368
C2H2 Zn finger 456..476 CDD:275368
C2H2 Zn finger 486..506 CDD:275368
HARE-HTH <566..625 CDD:294801
CG4820NP_001097748.1 zf-AD 4..75 CDD:285071 19/80 (24%)
C2H2 Zn finger 224..244 CDD:275368 7/19 (37%)
C2H2 Zn finger 252..272 CDD:275368 4/19 (21%)
C2H2 Zn finger 279..297 CDD:275368 4/17 (24%)
C2H2 Zn finger 322..339 CDD:275368 5/17 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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