DRSC/TRiP Functional Genomics Resources

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Protein Alignment pita and CG8319

DIOPT Version :9

Sequence 1:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster
Sequence 2:NP_649920.2 Gene:CG8319 / 41165 FlyBaseID:FBgn0037722 Length:383 Species:Drosophila melanogaster


Alignment Length:479 Identity:102/479 - (21%)
Similarity:167/479 - (34%) Gaps:137/479 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 VCRFC-LTEQKLASIFEEN-----------PRVKTTANLPLQIMAITAIEVYAGDGMPGHICLEC 69
            :||.| ...:.:..||::.           ..|||.|::.|.          ..|.||..:|:.|
  Fly     4 LCRICGGASENMLGIFDDQVEEYVDGAKLAEMVKTCADVQLD----------PDDAMPQKMCISC 58

  Fly    70 RLLFEHCYRFKQMCKRAETLLRQYPLTGNWPSPLEKPRAPMTMVASKKLLVVPAKTAEPSETPKK 134
            .......|.||:.|:                                             |..||
  Fly    59 VHDARTAYGFKRRCE---------------------------------------------ENYKK 78

  Fly   135 LLNTMAKSSSQVIIEDVQVLESAMVTPRTVAGSSPVPRRSHAYELKVDNNQELSMDDVQSMLEDM 199
                                                      :.|.:.|.|         :::|.
  Fly    79 ------------------------------------------FYLAILNGQ---------VIKDE 92

  Fly   200 ASELEKEFPDIPQKASPVKPKVLNKSSIRILNKGPAAPVEPRLATPKVKR------DDSGNVAIV 258
            .:|.:..|.:.|.|.:....|.||| .|:..::..:...:..:.|.:..|      :.:....:.
  Fly    93 PNEEDFLFIENPDKGNLEAKKKLNK-EIKKTHQTASRTTKSSITTSRAGRQLRSIKNQTFKCELC 156

  Fly   259 TEVLDSDLPLDDQDDPTKNAEKVATDVFPCPDCERSFPLQQLLEIHRLNHTRSRSFQCLLCEKSF 323
            .:.....:.|.|.       .||.::...|.:||..|..:..|:.|:.....:.:.:|..|.|.|
  Fly   157 IKQFKRQINLLDH-------MKVHSNSHVCQNCEERFLFKADLDNHQCYRNSNSTVECPECLKVF 214

  Fly   324 FSKYDLAKHNFVHTGER-PFKCAICSKAFTRKALLHRHERTHTDVPK----FICVYCEKPFLSRQ 383
            .|...|..|......|| ||:|..|.:||||:..|..|...|.:..:    ..|.||:..|.::.
  Fly   215 SSTQSLDSHKCKDMQERSPFQCPHCQQAFTREQNLKAHLLIHAESKQGNGPHKCSYCQTGFFNKS 279

  Fly   384 EMEKHAERHQKKRPFQCGVCTKSFAFKQGLERHETVHSTNLPFPCQHCERSFSTASKLARHLVAH 448
            .::.|...|..:||..|..|..:|..||.|:.|..:|:...|:.|.||.::||..:.||:|...|
  Fly   280 ALKVHIHAHMGERPHACPFCVSNFRSKQALKVHIRIHTGEKPYQCPHCPKTFSDNNNLAKHRRRH 344

  Fly   449 AGKRAYPCKYCHKSYMLSHHLSRH 472
            :.:|.|.|..|.:.:...|||.||
  Fly   345 SDERPYKCSICLQDFREKHHLKRH 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitaNP_611806.3 zf-AD 17..92 CDD:214871 19/86 (22%)
COG5048 <281..506 CDD:227381 62/197 (31%)
C2H2 Zn finger 288..308 CDD:275368 6/19 (32%)
C2H2 Zn finger 316..336 CDD:275368 7/19 (37%)
zf-H2C2_2 328..353 CDD:290200 10/25 (40%)
C2H2 Zn finger 344..364 CDD:275368 8/19 (42%)
C2H2 Zn finger 372..388 CDD:275370 4/15 (27%)
C2H2 Zn finger 400..420 CDD:275368 7/19 (37%)
C2H2 Zn finger 428..448 CDD:275368 8/19 (42%)
C2H2 Zn finger 456..476 CDD:275368 7/17 (41%)
C2H2 Zn finger 486..506 CDD:275368
HARE-HTH <566..625 CDD:294801
CG8319NP_649920.2 zf-AD 4..79 CDD:285071 22/171 (13%)
COG5048 <153..368 CDD:227381 63/221 (29%)
C2H2 Zn finger 153..173 CDD:275368 3/26 (12%)
C2H2 Zn finger 179..196 CDD:275368 5/16 (31%)
C2H2 Zn finger 207..227 CDD:275370 7/19 (37%)
C2H2 Zn finger 236..256 CDD:275368 8/19 (42%)
C2H2 Zn finger 268..288 CDD:275368 5/19 (26%)
C2H2 Zn finger 296..316 CDD:275368 7/19 (37%)
zf-H2C2_2 308..332 CDD:290200 7/23 (30%)
zf-C2H2 322..344 CDD:278523 8/21 (38%)
C2H2 Zn finger 324..344 CDD:275368 8/19 (42%)
C2H2 Zn finger 352..368 CDD:275368 5/15 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45449799
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3885
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24390
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.890

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