DRSC/TRiP Functional Genomics Resources

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Protein Alignment pita and ranshi

DIOPT Version :9

Sequence 1:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster
Sequence 2:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster


Alignment Length:500 Identity:99/500 - (19%)
Similarity:168/500 - (33%) Gaps:187/500 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 EKRVCRFC---LTEQKLASIFEENPRVKTTANLPLQIMAITAIEVYAGDGMPGHICLECRLLFEH 75
            |.:|||.|   ...::..:|||:  |.:||..   .|..:|...:.....:|..:|..|:...:.
  Fly     2 EGKVCRTCGKRTNAERSLNIFEK--RNQTTLE---HIKLLTGAVLKNCSTLPNRLCASCQTCLQQ 61

  Fly    76 CYRFKQMCKRAETLLRQYPLTGNWPSPLEKPRAPMTMVASKKLLVVPAKTAEPSETPKKLLNTMA 140
            ...|::.|                                             .|..::||::. 
  Fly    62 AISFRERC---------------------------------------------LEVQRELLHSQ- 80

  Fly   141 KSSSQVIIEDVQVLESAMVTPRTVAGSSPVPRRSHAYELKVDNNQELSMDDVQSMLEDMASELEK 205
                    :|...|.....:|::|.                 ..:||.:|     |.:::.|:|:
  Fly    81 --------DDEDFLRICQESPKSVL-----------------EQEELELD-----LAEISIEVER 115

  Fly   206 EFPDIPQKASPVKPKVLNKSSIRILNKGP----AAPVEPRLATPKVKRDDSGNVAIVTE------ 260
                                 :..||:||    ...||..|...|:..|:..|...:..      
  Fly   116 ---------------------LDDLNEGPIQSSGFKVEDILNESKINEDEPNNEDDIDYSEMDYL 159

  Fly   261 VLDSDLPLD-------DQDDPTKNAE----KVATDVFPCPDCERSFPLQQLLEIHRLNHTRSRSF 314
            :.:||..:|       |.::|.|...    :.:...|.|.:|......:....:|...|...:.|
  Fly   160 IYESDTEVDAKQELKSDSENPKKRRNRRNPRDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEF 224

  Fly   315 QCLLCEKSFFSKYDLAKHNFVHTGERPFKCAICSKAFTRKALLHRHERTHTDVPKFICVYCEKPF 379
            .|..||..|.:..:|.:|...||||:||||..||::|:..:...:||||||:             
  Fly   225 GCEFCEDRFCTPAELKRHIRKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTN------------- 276

  Fly   380 LSRQEMEKHAERHQKKRPFQCGVCTKSFAFKQGLERHETVHSTNLPFPCQHCERSFSTASKLARH 444
                                              ||         ||.|:.|..:|:|:..|..|
  Fly   277 ----------------------------------ER---------PFVCKECNNAFTTSYILKNH 298

  Fly   445 LVAHAGKRAYPCKYCHKSYMLSHHLSRHLRTHT-----QTSDASF 484
            ::.|.|::|:.|..|.|.:....||:.|.|::.     |.:|..|
  Fly   299 MLVHTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHRRNMQKADTIF 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitaNP_611806.3 zf-AD 17..92 CDD:214871 17/77 (22%)
COG5048 <281..506 CDD:227381 51/208 (25%)
C2H2 Zn finger 288..308 CDD:275368 3/19 (16%)
C2H2 Zn finger 316..336 CDD:275368 6/19 (32%)
zf-H2C2_2 328..353 CDD:290200 13/24 (54%)
C2H2 Zn finger 344..364 CDD:275368 7/19 (37%)
C2H2 Zn finger 372..388 CDD:275370 0/15 (0%)
C2H2 Zn finger 400..420 CDD:275368 2/19 (11%)
C2H2 Zn finger 428..448 CDD:275368 6/19 (32%)
C2H2 Zn finger 456..476 CDD:275368 7/19 (37%)
C2H2 Zn finger 486..506 CDD:275368
HARE-HTH <566..625 CDD:294801
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 18/121 (15%)
C2H2 Zn finger 198..218 CDD:275368 3/19 (16%)
COG5048 222..>276 CDD:227381 23/53 (43%)
C2H2 Zn finger 226..246 CDD:275368 6/19 (32%)
zf-H2C2_2 238..262 CDD:290200 12/23 (52%)
C2H2 Zn finger 254..274 CDD:275368 7/19 (37%)
zf-H2C2_2 269..291 CDD:290200 13/77 (17%)
C2H2 Zn finger 282..302 CDD:275368 6/19 (32%)
zf-H2C2_2 295..319 CDD:290200 8/23 (35%)
C2H2 Zn finger 310..328 CDD:275368 6/17 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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