DRSC/TRiP Functional Genomics Resources

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Protein Alignment pita and Neu2

DIOPT Version :9

Sequence 1:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster
Sequence 2:NP_649316.1 Gene:Neu2 / 40375 FlyBaseID:FBgn0037085 Length:382 Species:Drosophila melanogaster


Alignment Length:412 Identity:115/412 - (27%)
Similarity:160/412 - (38%) Gaps:111/412 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 LLNTMAKSSSQVIIEDVQ----VLESAMVTPRTVAGSSPVPRRSHA-YELKVDNNQELSMDDVQS 194
            |.||:.||    .:||.|    ::|:.              .|||. |....|..:|.|.:|...
  Fly    33 LSNTICKS----CLEDAQNAFDIIETY--------------ERSHQFYRFLKDVREEESENDGSG 79

  Fly   195 MLEDMASELEKEFPDIPQKASPVKPKVLNKSSIRILNKGPAAPVEPRLATPKVKRDDSGNVAIVT 259
            ..|    |:|....|:...|..|                                 ||||...:.
  Fly    80 CSE----EVEAAERDLQDGADDV---------------------------------DSGNEPDIN 107

  Fly   260 EVLDSDLPLDDQDDPTKNAEKVATDVFPCPDCERSFPLQQLLEIHRLNHTRSRSFQCLLCEKSFF 324
            |   .|:         |..||..   |.|..|.:||.::..|::|..:||..|.|.|.||.|||.
  Fly   108 E---CDI---------KAKEKPG---FSCSHCPKSFQVKSNLKVHMRSHTGERPFTCSLCPKSFG 157

  Fly   325 SKYDLAKHNFVHTGERPFKCAICSKAFTRKALLHRHERTHTDVPKFICVYCEKPFLSRQEMEKHA 389
            ....|..|...|||||||:|:.|.::||....|..|.:.|.......|.||:|.||:...:::|.
  Fly   158 YSSGLQNHMRTHTGERPFQCSHCPRSFTAGHHLKAHIQMHERRGSLRCPYCQKCFLTSLILKQHL 222

  Fly   390 ERHQKKRPFQCGVCTKSFAFKQGLERHETVHSTNLPFPCQHCERSFSTASKLARHLVAHA----- 449
            ..|..:..|:|..|:|||..:..|..|..||...| |.|.||.:.|:..:.|.|||..:|     
  Fly   223 ATHTDETQFKCSQCSKSFQVEHELWMHMRVHQERL-FTCGHCSKDFALHAYLKRHLSRNARCSQS 286

  Fly   450 ----------GKRAYPCKYCHKSYMLSHHLSRHLRTHTQT-----------------SDAS---F 484
                      ..:|..|..|.|::.....||.||::||:.                 |:|.   |
  Fly   287 SKASAHKTLGHSKALKCGKCPKTFTDRSALSTHLKSHTKNKPLLEGPCKSSGSKPAHSNAQRKPF 351

  Fly   485 VCSECKVSYSNYNDLLDHALIH 506
            .||.|..::|..:.||.|...|
  Fly   352 KCSSCPRTFSRKSALLTHLQTH 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitaNP_611806.3 zf-AD 17..92 CDD:214871
COG5048 <281..506 CDD:227381 82/259 (32%)
C2H2 Zn finger 288..308 CDD:275368 6/19 (32%)
C2H2 Zn finger 316..336 CDD:275368 8/19 (42%)
zf-H2C2_2 328..353 CDD:290200 12/24 (50%)
C2H2 Zn finger 344..364 CDD:275368 6/19 (32%)
C2H2 Zn finger 372..388 CDD:275370 6/15 (40%)
C2H2 Zn finger 400..420 CDD:275368 7/19 (37%)
C2H2 Zn finger 428..448 CDD:275368 8/19 (42%)
C2H2 Zn finger 456..476 CDD:275368 7/19 (37%)
C2H2 Zn finger 486..506 CDD:275368 7/19 (37%)
HARE-HTH <566..625 CDD:294801
Neu2NP_649316.1 zf-AD 1..63 CDD:285071 12/47 (26%)
COG5048 <119..241 CDD:227381 46/121 (38%)
C2H2 Zn finger 121..141 CDD:275368 6/19 (32%)
zf-H2C2_2 133..158 CDD:290200 12/24 (50%)
C2H2 Zn finger 149..169 CDD:275368 8/19 (42%)
zf-H2C2_2 162..185 CDD:290200 11/22 (50%)
C2H2 Zn finger 177..197 CDD:275368 6/19 (32%)
C2H2 Zn finger 205..225 CDD:275368 7/19 (37%)
zf-C2H2_8 206..286 CDD:292531 28/80 (35%)
C2H2 Zn finger 233..253 CDD:275368 7/19 (37%)
C2H2 Zn finger 260..297 CDD:275368 9/36 (25%)
C2H2 Zn finger 303..323 CDD:275368 7/19 (37%)
C2H2 Zn finger 353..373 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446570
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 116 1.000 Inparanoid score I3381
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.980

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